Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_2106 |
Symbol | |
ID | 5058569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 2380040 |
End bp | 2381779 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640474369 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001158935 |
Protein GI | 145594638 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.119399 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0955445 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTCCG CACCCGTAAG GCCAGATCCA ACTGCCGAAC CGTCCACTGA CGACGAGGCG ACCGCCTTCG TCGACCTGGG CCTGCGCGAC GAACTCCTCG CCGCGCTCGC CGCGCTCGGC TACGAGGAGC CGACGCCGAT CCAGCGGGAG GCGATCCCTC CCCTGCTCGC CGGACGGGAT CTACTCGGCC AGGCCGCCAC GGGTACCGGC AAGACGGCCG CGTTCGCCCT GCCGATGCTG CAACGGATGC CTGCCAACCG GTCGACCACC AATCCGGTGG CACTGGTGCT GGTACCCACC CGAGAGCTGG CGGTACAGGT CTCGGAGGCG TTCCATCGGT ACGGCAAGGA ACTTGGCGCC CGGGTACTGC CGATCTACGG TGGCCAGCCG ATCGGCCGGC AACTGCGCGC TCTGGACGCC GGGGTGGACG TCGTGGTGGC AACCCCCGGT CGAGCGCTCG ACCACATCGC CCGCGGTACG CTGCGCCTGG GTGACGTCGG CACCGTCGTG CTGGACGAGG CGGACGAAAT GCTGGACATG GGCTTCGCCG AGGACATCGA GGCGATCCTG GAACACGCGC CGGAGCAGCG GCAGACCGTG CTGTTCTCGG CGACCATGCC GGCCCGCATC GACGGCATGG CCCGGGCTCA CCTGACCGAC CCGATCCGCA TCCTCATCGC GCGAGAGAAG CCGGTAGCCG GCGAGGCTCC CCGGGTACGG CAGAGCGCGT ACCTGGTGTC CCGGGCGCAC AAGCCCGCCG CGCTGGGCCG GGTGCTGGAC GTCGAGTCCC CCACGGCGGC GATCGTCTTC TGCCGCAGCC GGGAGGAGGT TGACCGGCTC ACCGAGACGA TGAACGGTCG CGGCTACCGG GCCGAGGCGC TGCACGGCGG GATGAGTCAG GAGCAGCGGG ACCGGGTGAT GGGTCGGCTG CGCGCCGGTA CCGCCGACCT GTTGGTAGCC ACCGACGTGG CAGCGCGGGG CCTGGATGTC GAGCAGCTCA GCCACGTCGT CAACTACGAC GTCCCCTCGG CGCCCGAGTC GTACGTGCAC CGGATCGGCC GGGTGGGGCG AGCCGGCCGG GAGGGGGTGG CGATCACTCT CGCCGAGCCA CGGGCGCACC GGATGCTCAA GACCATCGAA CGGGTCACCG GCCAACGGAT CACCATCGAC AAGATCCCCA CCGTGGCGGA CCTGCGCAAT CGTCGCCTGG AACTCACCCA GGCCGCGCTG CGGGAGAGCC TGCTGGAGGA CGACCTGGAG CCGTTCCGGG TCATCGTCGA GTCACTGAGC GACGAGTTCG ACCTGATGGA GGTGGCCCTC GCCGCGGTAC GCCTGGCCCA CGAGGCCACC CTGCCCGGCG CCTTGGAGGA GGAAGAGGAG ATCCCGGAGA TCGCGGTTCG CCCACCCCGG GCCGGCCGCC CGGGACACGA GGGCCGGGGA GAGCGCCGGC CGGGGCGGCC CCGGAGCGCC GGCACCACCC AGGTCTTCGT CGGGCTGGGT CGGCGTGCCG GGGTCCGACC GCAGGATCTG GTCGGCGCGA TCACCGGCGA GACCGGCATG AACGGCCGGG ATATCGGCTC GATCGAGATC GCGGACCGCT TCTCGCTGGT GGAGGTGCCG GCGGGGATGG CCGACGAGGT GATCTCCGGC CTGCGCGGCA GCACCATCAA GGGACGCCGG ACGACCGTTC GCCGCGATCG TGACACCGAC GGGGGTGACC GCCGCCGGCA GCACCGTTGA
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Protein sequence | MSSAPVRPDP TAEPSTDDEA TAFVDLGLRD ELLAALAALG YEEPTPIQRE AIPPLLAGRD LLGQAATGTG KTAAFALPML QRMPANRSTT NPVALVLVPT RELAVQVSEA FHRYGKELGA RVLPIYGGQP IGRQLRALDA GVDVVVATPG RALDHIARGT LRLGDVGTVV LDEADEMLDM GFAEDIEAIL EHAPEQRQTV LFSATMPARI DGMARAHLTD PIRILIAREK PVAGEAPRVR QSAYLVSRAH KPAALGRVLD VESPTAAIVF CRSREEVDRL TETMNGRGYR AEALHGGMSQ EQRDRVMGRL RAGTADLLVA TDVAARGLDV EQLSHVVNYD VPSAPESYVH RIGRVGRAGR EGVAITLAEP RAHRMLKTIE RVTGQRITID KIPTVADLRN RRLELTQAAL RESLLEDDLE PFRVIVESLS DEFDLMEVAL AAVRLAHEAT LPGALEEEEE IPEIAVRPPR AGRPGHEGRG ERRPGRPRSA GTTQVFVGLG RRAGVRPQDL VGAITGETGM NGRDIGSIEI ADRFSLVEVP AGMADEVISG LRGSTIKGRR TTVRRDRDTD GGDRRRQHR
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