| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2012 |
|---|
| Symbol | |
|---|
| ID | 5058475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2281857 |
|---|
| End bp | 2283812 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640474278 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_001158844 |
|---|
| Protein GI | 145594547 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.415027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.109975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAC CGCTGTCCGA CACTCGGGCG CGTACCGATG CCAGCCTCGT TCGCGACCGT
CTGGCTGGGT CCAGCGCGTG GCGGCTGCGT GAGGTGCAGT GGGCGTCGAT CGCGACGGTG
CTGTTCGCCG GGGGAGGTCT CGCCCAACTG TCGGGCGCAC CGCAGATCGT GTGGTGGGGG
CTGTATCTGG CCTGCTATGT GACCGGCGGC TGGGAGCCCG GCCTTGCCGG ACTTCGCGCT
CTGCGCGACC GGACCCTGGA TGTGGATCTC CTTATGGTCG CCGCCGCGAT TGGCGCGGCC
AGCATCGGGC AGGTCTTCGA CGGAGCATTG CTGATCGTCA TCTTCGCCAC CTCCGGTGCG
TTGGAAGCGG TGAGCACCCA CCGCACCGAA CAGTCGGTAC GCTCACTGCT CGATCTGGCC
CCGCAAACCG CCACCCGCCT CACCGACGGC GGAGAGGAGA TCGTCGTCGC CGCCGACCTG
GCGGTCGGGG ATGTGGTCCT GGTCCGCCCC GGGGAGCACA TAAGTGCCGA CGGCGAGGTC
GTCGACGGGA CGAGCCAGGC CAACCAGGCT TCGATCACCG GGGAGCCGCT GCCGGTGGAC
AAGCTTCCCG GCGACGAGGT GTTCGCTGGA ACACTCAACG GCACGGGTGC GCTGACTGTG
CGGGTCAACC GGGCCGCCGC CGACTCGGTG ATCGCCCGGA TCGTGGCCAT GGTCGCCCAA
GCATCAGCGA CGAAGTCGAA GGCGCACCTG TTCATCGAGA AAGTCGAGCA GCGCTACTCG
CTCGGCATGG TCGCGGCCAC CCTCGCACTG TTCACCATCC CGCTGCTGGC CGGCGCCGAT
CTGCAGCCGA CCCTGCTGAG GGCGATGACT TTTATGATCG TTGCCTCGCC GTGCGCGGTG
GTACTGGCCA CGATGCCCCC ACTGCTGGCC GCGATCGCTA ACGCGGGACG CCACGGAGTC
CTGGTGAAGT CGGCGGTGGT AATGGAACAC CTGGCCGACG GCGACCAGGT TGCCTTCGAC
AAGACCGGCA CCCTGACCGA GGGCAGCCCG CGGGTCGCGG TCGTCCACCC GGTTTCCGAC
GTGGACCTTA CCTCCGCTGA CCTGCTGCGG CTGGCCGCTG CGGCCGAGTA CTCCAGTGAG
CACCCCATTG CCGCCGCGAT CGTCACGGCT GCCCGCGAGC AGGATCTGGA CTTCCCACCC
GCACAGCGGT TCGTCTCCTA CCCCGGTCGC GGCGTCCACG CCGTCGTCAA CGACCACGCT
GTCGAGGTAG GTACACCGAC CCTGCTGGAC GATGATCCAG ACGGCGCGGC AGGACGGCTG
GCGGCGCGGG TTCAACGTGA CGGGCACACG GCCGCCGTTG TCCTCGTCGA CGGAGTGGCT
GCCGGAGTGA TCGGCCTGTC CGACCGTATT CGGCCCGCCG CTGCGCCCAC CGTCGCCGCG
CTGTCCGCGC TGACCGGCCG GACACCGGTC CTGCTGACTG GCGACAACCC CGATGCCGCC
GGCGCCGTGG CCACCCAGAC CGGCATCACC GACGTTTACG CCGGATTGCT GCCCGACGGC
AAGGCCGACT ACGTACAACG GCTTCAGACC ACGGACCGTC GAGTGATCTT GATCGGCGAC
GGCGTCAACG ACGCCCCAGC GATGGCCACC GCGCATATCG GCATCGCCAT GGGCCGCAGC
GGCTCCGACC TCGCCCTGCA GACCGCGGAT GCGGTCATCG TCCGCGACGA CCTGACCACC
CTGCCATGCT TGCTCGCGTT GGCGCGTAGA GCCCGGCGGG TGGTCATCGC CAACCTTGCC
ATCGCCGCAT CCTTCATCGT CATCCTGGTC ATCTGGGACC TTGCCGGACA CCTGCCTCTG
CCGTTGGGCG TTGCCGGCCA CGAAGGCTCC ACCGTTCTTG TCGGGCTCAA CGGGTTACGA
CTGCTACGCA AGACCGCCTG GCGCAGCCCG CCTTAG
|
|---|
| Protein sequence | MTPPLSDTRA RTDASLVRDR LAGSSAWRLR EVQWASIATV LFAGGGLAQL SGAPQIVWWG
LYLACYVTGG WEPGLAGLRA LRDRTLDVDL LMVAAAIGAA SIGQVFDGAL LIVIFATSGA
LEAVSTHRTE QSVRSLLDLA PQTATRLTDG GEEIVVAADL AVGDVVLVRP GEHISADGEV
VDGTSQANQA SITGEPLPVD KLPGDEVFAG TLNGTGALTV RVNRAAADSV IARIVAMVAQ
ASATKSKAHL FIEKVEQRYS LGMVAATLAL FTIPLLAGAD LQPTLLRAMT FMIVASPCAV
VLATMPPLLA AIANAGRHGV LVKSAVVMEH LADGDQVAFD KTGTLTEGSP RVAVVHPVSD
VDLTSADLLR LAAAAEYSSE HPIAAAIVTA AREQDLDFPP AQRFVSYPGR GVHAVVNDHA
VEVGTPTLLD DDPDGAAGRL AARVQRDGHT AAVVLVDGVA AGVIGLSDRI RPAAAPTVAA
LSALTGRTPV LLTGDNPDAA GAVATQTGIT DVYAGLLPDG KADYVQRLQT TDRRVILIGD
GVNDAPAMAT AHIGIAMGRS GSDLALQTAD AVIVRDDLTT LPCLLALARR ARRVVIANLA
IAASFIVILV IWDLAGHLPL PLGVAGHEGS TVLVGLNGLR LLRKTAWRSP P
|
|---|
| |