| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1907 |
|---|
| Symbol | |
|---|
| ID | 5058369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2180380 |
|---|
| End bp | 2181402 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640474180 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001158747 |
|---|
| Protein GI | 145594450 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.275606 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTGA CCGGCGGAAA GCGGTTGGTC GACGGGTATG CCCTGGTCAT CTTCGATCTG
GACGGGGTGA TCTACCTGGT CGACCAGCCG ATCCCCGGGG CGATCGAGGC GGTTCGCCAG
CTGCATGCCG AAGAGCGGGC GGTCGCGTAC GCCACGAACA ATGCGTCTCG CCGGTCCAGT
GAGGTGGCCG ACCTGCTCAC CGGTATGGGC ATCGCCGCCG GTCCGGAGGA GGTGCTGACC
TCCGCGGCGG CCGCCGCGGA GCTGCTTCGG GAGCGGCATC CGGCGGGGAC GCAGATCCTG
GTCGTGGGGG CGGAGGCGCT ACGCGCCGAG ATCCGCGCCG CCGGGCTTAC CCCGGTCACG
CAGGCCGAGG ATGGGCCGGT CGCGGTGGTT CAGGGCTACG GCCCACAGGT CGGCTGGGCT
GACCTGGCTG AGGCAACGGC GGCGATTCGG GGTGGGGCGA CCTGGGTCGC TACCAACACC
GACCGCACGC TGCCCAGCAA GCGGGGTCCA CTACCCGGCA ACGGTGCCTT GGTCGCCGCG
GTGCGGATCG CGCTCGGACG GGACCCAGAC CTGGTCGTGG GTAAACCGGC GCCGGAGCTC
TTCGTCGCCG CCTCCCGCCG GGCCAGCGGG GGGCGTGCCC TGGTCGTCGG TGACCGTTTG
GACACCGACA TCGCGGGCGC GGTCCGAGCG GGGCTGGACA GCTTGCTTGT GCTGACTGGG
GTCAGCGACG TGGCCGAGCT GCTGGCCGCC GCGCCCGAGC ATCGACCGAC GTTCGTGTCG
GTGGACCTGG CGGGGCTCTT CGAGCCGGCC GCGGTGGTGC GGGTGCCGGG TCCGGTGGAG
GCCGGTGGGT GGTCGGCGGC GGTTCGTGAC GGCCGGCTGG AGCTGTCCGG TGCGGGTCAC
CCCCTGGATG CGCTGCCGGC GCTCTGTGCG GTGGCGTGGT CCACCGCGTG GTCATCGCCG
GTGCGGGCGG CCTCGTCGGC GGCTGAGCGG GCGCTTACGA CGTTCGGCCT GTTGTCTGAC
TGA
|
|---|
| Protein sequence | MTLTGGKRLV DGYALVIFDL DGVIYLVDQP IPGAIEAVRQ LHAEERAVAY ATNNASRRSS
EVADLLTGMG IAAGPEEVLT SAAAAAELLR ERHPAGTQIL VVGAEALRAE IRAAGLTPVT
QAEDGPVAVV QGYGPQVGWA DLAEATAAIR GGATWVATNT DRTLPSKRGP LPGNGALVAA
VRIALGRDPD LVVGKPAPEL FVAASRRASG GRALVVGDRL DTDIAGAVRA GLDSLLVLTG
VSDVAELLAA APEHRPTFVS VDLAGLFEPA AVVRVPGPVE AGGWSAAVRD GRLELSGAGH
PLDALPALCA VAWSTAWSSP VRAASSAAER ALTTFGLLSD
|
|---|
| |