| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1874 |
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| Symbol | |
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| ID | 5058333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 2143353 |
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| End bp | 2144414 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640474144 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001158714 |
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| Protein GI | 145594417 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCG TCTCCGTAGA TGAGGCGATG CGTCGCGCAG TTGACCTCGC CGCGCGTGGC
CTCGGTACCA CCAGCCCCAA CCCGGTCGTC GGCTGCGTGC TGCTCGACCC GGGTGGTCAG
GTCGTCGGTG AGGGCTTCCA CGCGTACGCC GGCGGACCGC ATGCCGAGAT TGTCGCCCTC
GCCCACGCGG GGGAGCGGGC GCGGGGCGGC ACCGCGGTGG TAACGCTGGA ACCCTGCGAT
CACACCGGCC GTACGGGCCC GTGTAGCACC GCTCTGGTGC AGGCCGGCGT CGCCCGGGTG
GTGATCGCCG TACCCGACCC GAACCAGGCC GCGTCCGGTG GCGCCGCCAC GCTGCGCGCC
GCCGGGGTCC GGGTCGACCT GGGCGTACGC GCCGCTGAGG CGGAGGCGGG CAACATCGCG
TGGCTGACCT CGACGCGTCG GGGCTGGCCG TACCTCCTCT GGAAGTACGC GGCGACGCTG
GACGGGCGGT CCGCCGCCGC CGACGGCACC AGCATGTGGA TCACTTCCGA GGCGGCCCGA
ATGGACGTGC ACGCGCTGCG CGGCACGGTG GACGCCGTCC TCGCCGGGGT GGGCACCGTG
CTCGCCGACG ACCCGCGCCT GACCGTTCGG AACCTGCGCG ACGGCAGCCT CGCCATCCGG
CAGCCGCTGC GGGTGGTGGT GGACTCGGCG GGCCAGACCC CGGCCGGGGC GCGGGTCCGC
GACGACGCCG CACCCACCTG GATCGCCACC GCCGATGAGG TGGGTACCGA TTCGGCGGGC
CGGGTCGATC TGCCGGCGCT GCTCGCCGCG TTGCACCAGC GCGGGGTGCG CGCCGCGCTG
CTGGAGGGAG GGCCACGGCT GGCCGGCGCG TTCCTCGCCG CCGGATTGGT CGACAAGATC
GTCGGCTACG TCGCGCCCCG GCTGCTCGGC GCCGGCCCCA CCGCACTGGC GGACGCGGGG
GTGACCACGA TCACCGATGC CATCGACTGC GAGGTCATTG ACGTTACCCA GGTCGGTCCC
GACCTGCGGA TCACCGCACT GCCCCGGAAG AGGGAGGGCT GA
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| Protein sequence | MAGVSVDEAM RRAVDLAARG LGTTSPNPVV GCVLLDPGGQ VVGEGFHAYA GGPHAEIVAL
AHAGERARGG TAVVTLEPCD HTGRTGPCST ALVQAGVARV VIAVPDPNQA ASGGAATLRA
AGVRVDLGVR AAEAEAGNIA WLTSTRRGWP YLLWKYAATL DGRSAAADGT SMWITSEAAR
MDVHALRGTV DAVLAGVGTV LADDPRLTVR NLRDGSLAIR QPLRVVVDSA GQTPAGARVR
DDAAPTWIAT ADEVGTDSAG RVDLPALLAA LHQRGVRAAL LEGGPRLAGA FLAAGLVDKI
VGYVAPRLLG AGPTALADAG VTTITDAIDC EVIDVTQVGP DLRITALPRK REG
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