| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1806 |
|---|
| Symbol | |
|---|
| ID | 5058265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2065592 |
|---|
| End bp | 2067511 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640474077 |
|---|
| Product | GAF domain-containing protein |
|---|
| Protein accession | YP_001158647 |
|---|
| Protein GI | 145594350 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCA TGTCCTCGCC GGTGGAGTTC CTGGAACTAC TCGCCCGCGA AGCCTCGGCG
GTGGAGTTCG AGGGCCCGCT GTTAGCCGCG CGCACCGCCG GAGCGCCCCC GGAGCGGCTG
GCCGAGCTGG AACGGGCCAA GACCGTCGCG TTGCGGGTGC GGGCGCTGCT GGAACGACGG
CGACGCCGGG AAAGTGAGCT CTCCGGACTG TACGACACCG TCAGTGACCT GGCCGGGCTC
CGCGATCTGG ACGACGTGCT GCGGGCGATC GCGCGCCGGG CCCGAACCCT GCTCGACGCC
GACGTCGCCT ACATGACGCT CAACGACGAC CGGCGCGGCG ACACCTACAT GCGGGTCACC
GACGGCTCGG TGTCGGCCCG GTTCCAACAG CTGCGGCTAC CGATGGGTGC CGGTCTCGGC
GGCCTGGTCG CCCAGTCCGG CGCCCCGTAC GTCACGGCGA ACTATCCGGC GGACGACCGG
TTCCACCACA CCCGGGAGAT CGACGCCGGA GTCGGCGAGG AGGGCCTGGT GGCCATCCTC
GGAGTCCCGC TGCGGCTGGG CTCGATCTCG ATCGGCGTGC TCTACGCGGC CAACCGCTCG
GCGCGCCCGT TCGCCCGGGA GGAGGTGGCC CTCCTGGCCT CGCTGGCCGC GCACGCCGCC
GTCGCGATCG ACACCGCTCG GCTGCTCACC GAGACCCGCT CCGCGTTGGC GGAGCTGTCA
GCGGCCAACG CCACCATCGG GGCACACAGC GCGTCGGTGG AGCGCGCGGC GGCGGCACAC
GACCGGATGA CCGCGCTGGT GCTCCGGGGC GGCGGCGTGG AGGAGGTCGC CGCCGCCGTA
CCGGAGGTGC TGGGCGGCGC GCTACTGGCC CTGGACGCCG AGGGCCGGCT CCTGGCCCGG
GTCGGCGAGA TCGACGAACC GAGGCGGGCG GAGATCGTGG CAGCGGTGGC CGCGTCCCGG
GCCGCGGGGC GCAGCGTACG TCGAGGCGCA CTCTGGTACG CCGCCGTGGT CGCCGGCGCC
GAAAACCTGG GGGCGTTGGT GCTTCGCCCG GACGACGAGT TGGTCGACGC CGACCAGCAG
ATCCTGGAGC GGGCCGCCCT GGTCACCGCG CTGCTGCTGT TGTTTCGGCG GATGGTCGCC
GAGGCGGAGG GGCGGGTCCG CGGCGAACTC CTCGACGACC TGATCGCCGA CCCACCGCGC
GACACCGACG CGCTCCGCGA CCGTGCCCGC CGGCTCGACG TGAACCTGGA CACCGCGCAG
GTACTGGTCT GTGTGCACGA CGGCGCCATC GCCGCGACGG ACTCTGCCCG GCAACGGACC
CTCTCCTGGG CCACCACATA CGCCTCCACC CGCGGCGGGC TGGCCGCGGC CCGGGACGGG
AAGGTGGTGC TGCTGCTGCC CGGCCCGGAT GCGGGCGGCG CCGCCCGCGC GGTGGCGCGG
GACCTGTCGC GGCTAACCGG CCGTCGGGTG ACCGCCGGCG GCGGTGGTCC CGCCACCGGT
CCGGCCGCAC TGGCAGCGAC GTTCCGCGAG GCGGAGCGCT GTCTCACCGC GCTCGGTGCG
CTCGGCCGGG CCGGGCAGGG CGCCAGTGCT GACGAGTTGG GCTTCGTCGG CCTGCTGCTG
GGCGCGGTCG ACATCGGCGG CGACCGCGAC GTCTCCCGGT TCCTGACGGC CACCGTGGGG
CCAGTGATCG ACTACGATGC CCGCCGGGGC ACCGCCCTGG TGCGGACCCT GGAGGCGTAC
TTCGGGGTGG GGAGCAGCCT GACCCGCGCC GCGGAGCAGC TGCACGTGCA CGTCAACACG
GTCACCCAAC GGCTGGAGCG GGTCGGCCAC CTCCTCGGCG TCGACTGGCA GCAGCCGGAG
CGGGTCCTCG AGGTGCAGCT CGCGCTCCGG CTACACCGAC TCCGCCGACC GTCCGGCTGA
|
|---|
| Protein sequence | MAVMSSPVEF LELLAREASA VEFEGPLLAA RTAGAPPERL AELERAKTVA LRVRALLERR
RRRESELSGL YDTVSDLAGL RDLDDVLRAI ARRARTLLDA DVAYMTLNDD RRGDTYMRVT
DGSVSARFQQ LRLPMGAGLG GLVAQSGAPY VTANYPADDR FHHTREIDAG VGEEGLVAIL
GVPLRLGSIS IGVLYAANRS ARPFAREEVA LLASLAAHAA VAIDTARLLT ETRSALAELS
AANATIGAHS ASVERAAAAH DRMTALVLRG GGVEEVAAAV PEVLGGALLA LDAEGRLLAR
VGEIDEPRRA EIVAAVAASR AAGRSVRRGA LWYAAVVAGA ENLGALVLRP DDELVDADQQ
ILERAALVTA LLLLFRRMVA EAEGRVRGEL LDDLIADPPR DTDALRDRAR RLDVNLDTAQ
VLVCVHDGAI AATDSARQRT LSWATTYAST RGGLAAARDG KVVLLLPGPD AGGAARAVAR
DLSRLTGRRV TAGGGGPATG PAALAATFRE AERCLTALGA LGRAGQGASA DELGFVGLLL
GAVDIGGDRD VSRFLTATVG PVIDYDARRG TALVRTLEAY FGVGSSLTRA AEQLHVHVNT
VTQRLERVGH LLGVDWQQPE RVLEVQLALR LHRLRRPSG
|
|---|
| |