| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1709 |
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| Symbol | sdhA |
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| ID | 5058168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 1957856 |
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| End bp | 1959787 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640473981 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001158551 |
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| Protein GI | 145594254 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0636844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.274652 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCT ACACCGAAGG TAACCCGGTC ACCGACACCC GGGCCCCGGA CGGGCCGATC
GAGGGCCGCT GGGACAGTCG CCGGTTCACC GCCAAACTGG TCAACCCGGC CAACCGTCGC
AAGCTGACGG TAATCGTTGT CGGCACCGGC CTGGCCGGCG GTTCGGCGGC CGCCACCCTC
GCCGAGCAGG GCTACCGAGT CCGGTCCTAC TGCTACCAGG ACAGCCCGCG CCGGGCCCAC
TCGATCGCCG CCCAGGGCGG CATCAACGCC GCGAAGAACT ACCGCAACGA CGGCGATTCG
GTGCACCGCC TCTTCTACGA CACCGTCAAG GGCGGCGACT TCCGCTCCCG CGAGTCGAAC
GTGCACCGAC TCGCCGAGGT GTCGGTCAAC ATCATTGACC AGTGCGTCGC CCAGGGCGTC
CCGTTCGCCC GCGAGTACGG CGGCCTGCTC GACACCCGCT CCTTCGGCGG CGCGCAGGTA
CAGCGCACCT TCTACGCCCG GGGCCAGACG GGCCAGCAGC TGCTGCTCGG GGCGTACCAG
GCGCTGGAAC GTCAGGTCGG CCTCGGCAAC GTGGAGATGA ACACCCGGCA CGAGATGCTG
GAGCTGATCG TCGTTGACGG CCGGGCCCGG GGGATCGTCG TACGGGACCT GGTCACCGGC
GAGATCACCA CTGAGTTCGC CGACGCGGTC GTACTCGCCT CCGGCGGCTA CGGCAACGTC
TTCTACCTCT CCACGAACGC CAAGGGTTGC AACGTCACCG CCACCTGGCG GGCGCACCGC
CAGGGCGCGT ACTTCGCCAA CCCCTGCTAC ACGCAGATCC ACCCGACCTG CATTCCGGTC
TCCGGCGACC ATCAGTCGAA GCTGACGCTG ATGAGCGAGT CGCTCCGCAA CGATGGCCGG
GTGTGGGTGC CCAAGGCCGA GGGTGATGAC CGCGATCCGC GTGAGATCCC CGAGGACGAG
CGGGACTACT ACCTGGAGCG AATCTACCCC TCGTTCGGCA ACCTGGTGCC CCGGGACATC
GCCTCCCGCG CCGCGAAGAA CGTCTGCGAC GAGGGTCGCG GTGTCGGCCC GACCCGGCTC
GGCGTCTACC TGGACTTCGC CGACGCGATC CAGCGGCTGG GCCGCAAGTC CATCGAGGCC
AAGTACGGCA ACCTCTTCGA GATGTACGAG CGGATCACCG GCGAGGACCC GTACGAGGTC
CCGATGCGGA TCTACCCGGC CGTGCACTAC ACGATGGGCG GGCTCTGGGT CGACTACGAC
CTCCAGGCGA CGATCCCCGG CCTCTTCGTG ATCGGCGAGG CGAACTTCTC CGACCACGGC
GCGAACCGAC TGGGCGCCTC CGCGCTCATG CAGGGGCTCG CCGACGGCTA CTTCGTGCTG
CCGAACACCA TCGCCAACTA CCTTGCGGCC GGCCCGTTCG AGAAGCTCGA GCCGAGCCAC
CCGGCGGCGG TCGAGGCCCG GCGAACCGTC GAGGACAGGA TCCATCGACT CCTCTCCGTA
GACGGCGACC GGACCGTGGA CTCGTTCCAC CGGGAGCTGG GCCAGATCAT GTGGGAGCAC
TGCGGCATGG AGCGCTCCGC TGCCGGCCTC CGCAAGGCGG TCGACGAGAT CCGCGCGCTG
CGGAAGGAGT TCTGGCAGCG GGTCCGGATC GTCGGCGACG CCGACGGGCT CAACCAGTCG
TTGGAGAAGG CCGGCCGGGT GGCCGACTTC TTCGAGCTGG CCGAGCTGAT GTGCATCGAC
GCCCTGCACC GCGAGGAGTC CTGCGGCGGC CACTTCCGCG CCGAGCACCA GAGCCCAGAC
GGCGAGGCCC AGCGCGACGA CGAGCGGTTC GCGTATGTGG CGGCCTGGGA GTACGGCACC
GAGCAACCGG TGCTACACAA GGAAGACCTC ACGTTCGAGT ACGTCCACCC CACGCAGCGG
AGTTACAAGT GA
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| Protein sequence | MDLYTEGNPV TDTRAPDGPI EGRWDSRRFT AKLVNPANRR KLTVIVVGTG LAGGSAAATL
AEQGYRVRSY CYQDSPRRAH SIAAQGGINA AKNYRNDGDS VHRLFYDTVK GGDFRSRESN
VHRLAEVSVN IIDQCVAQGV PFAREYGGLL DTRSFGGAQV QRTFYARGQT GQQLLLGAYQ
ALERQVGLGN VEMNTRHEML ELIVVDGRAR GIVVRDLVTG EITTEFADAV VLASGGYGNV
FYLSTNAKGC NVTATWRAHR QGAYFANPCY TQIHPTCIPV SGDHQSKLTL MSESLRNDGR
VWVPKAEGDD RDPREIPEDE RDYYLERIYP SFGNLVPRDI ASRAAKNVCD EGRGVGPTRL
GVYLDFADAI QRLGRKSIEA KYGNLFEMYE RITGEDPYEV PMRIYPAVHY TMGGLWVDYD
LQATIPGLFV IGEANFSDHG ANRLGASALM QGLADGYFVL PNTIANYLAA GPFEKLEPSH
PAAVEARRTV EDRIHRLLSV DGDRTVDSFH RELGQIMWEH CGMERSAAGL RKAVDEIRAL
RKEFWQRVRI VGDADGLNQS LEKAGRVADF FELAELMCID ALHREESCGG HFRAEHQSPD
GEAQRDDERF AYVAAWEYGT EQPVLHKEDL TFEYVHPTQR SYK
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