| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1686 |
|---|
| Symbol | |
|---|
| ID | 5058145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1927543 |
|---|
| End bp | 1928439 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640473958 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001158528 |
|---|
| Protein GI | 145594231 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.733207 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACA CGGCGGTGGC CGATGCTGAT TCAGGTCTGA CCGGGGCACA GTTGGCCGCC
CGGCACGGCC TGAGTATCGC CGACACAAGG CCCACGCTGA CTGCGTACAC CCGGGCGCTA
TGGTCCTATC GGCACTTCAT AACGACGTAC GCGAACGCCA AGGTGACCGC GTCCTTCAGC
CAGGCCCGAC TGGGGCAGAT CTGGCAGATG CTGACGCCGC TGACGAATGC CGCCGTCTAC
TATCTGATCT TCGGCGTGAT CCTGAACATC TCGCGGGATG TCGACAACTT CATCGCCTAT
CTCTGCGTCG GTCTCTTCGT CTTCACCTTC ACGTCGAGTA CCGCGACCGG CGGCATCTCG
GCCATCACCA CCAACCTCGG ACTGATCCGG GCACTGCACT TCCCCCGCGC GGCGCTGCCC
TTCGCGATCA CCCTCACGCA GCTCCGGCAC CTGCTCGCGG CGATGGTGGT GCTCGTCGGC
ATCGTCTTGG CGACCGGCGA GCCGATCACC CTGGAGTGGC TGCTGGTGAT TCCCGCGCTA
CTACTCCAGG TGGTGTTCAG CATTGGCCTG GCGCTGGCCC TGGCCCGGCT CGGTTCGAAG
CTGACCGACC TCAAACAGAT CATGCCCTTC GTGATGCGCA CCTGGATGTA TGGATCCGGC
GTGCTCTACA GCGTGCAGGC CTTCACCGAC AACCTTCCGG CCCTCGCGAC CACTCTGATC
CAGCTCAACC CAATGCTGGT CTACATCGAG TTGGTCCGAC ACGCGCTGCT GGAGGGCGCC
CCGGTGACCT CGGACATTCC CCGGCTGTTG CTCCTGGCGA CCGCGTGGGC GCTGGTCGTC
GGAGTCGGTG GATTTATCTA CTTTTGGCGC GGCGAGCAGG AGTACGGACG TGGCTGA
|
|---|
| Protein sequence | MANTAVADAD SGLTGAQLAA RHGLSIADTR PTLTAYTRAL WSYRHFITTY ANAKVTASFS
QARLGQIWQM LTPLTNAAVY YLIFGVILNI SRDVDNFIAY LCVGLFVFTF TSSTATGGIS
AITTNLGLIR ALHFPRAALP FAITLTQLRH LLAAMVVLVG IVLATGEPIT LEWLLVIPAL
LLQVVFSIGL ALALARLGSK LTDLKQIMPF VMRTWMYGSG VLYSVQAFTD NLPALATTLI
QLNPMLVYIE LVRHALLEGA PVTSDIPRLL LLATAWALVV GVGGFIYFWR GEQEYGRG
|
|---|
| |