Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1661 |
Symbol | |
ID | 5058120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1894561 |
End bp | 1895238 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640473934 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001158504 |
Protein GI | 145594207 |
COG category | [S] Function unknown |
COG ID | [COG4683] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.333034 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCCCG ACGAGTGGGA GATCTACCTC GTCAACGAGG TACAGGAGTG GATGGACGGC CTCGATCCCC TCACCCACGC CCGTGTCGTG CAAGCCATCG ACCTACTCGC CGAAGCCGGC CCAGGACTCG GCCGGCCACT GGTCGACACG ATCCACGGCT CGGCCCTCGC TAACCTCAAA GAGCTACGCC CCGCCACCGT CCGCATCCTG TTCGCCTTTG ACCCGTGGCG CTCCAGCATC CTGCTCGTCG CCGGAGACAA AGCTGGACGA TGGCAACAGT GGTACACCCC AAGCGATCCC CCTGGCCGAG CAACGCTACG AGATCTACCT CAAGGAACGC GCCAAGGAGG ACCGACAACC ATGAACAGCT ACACACGCTG GAGCGACATC CGCACCACCC ACGTCGAACG CGCCGGCGGC GAACAAGCCG TCGAAGACGG CAAACAGAAA CTCCTCGCCA CCGTCGTCGG ACACCGACTC GCCGAAGTAC GCCGCACTCG CGGCCTGACC CAACAGCAGG TCGCCGACCG CATGGGCGTC ACCAAAGGCC GCATCTCCCA GATCGAACAA GGCAAGATCT CCGGCCAAGA CATCGTCGCC CGATACGCCA CCGCCCTCGG CGGACGCCTC CACCAAGCCA TCTACTTCGA CGACGGCAAC ATCGCCGCCA TCGCATAG
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Protein sequence | MAPDEWEIYL VNEVQEWMDG LDPLTHARVV QAIDLLAEAG PGLGRPLVDT IHGSALANLK ELRPATVRIL FAFDPWRSSI LLVAGDKAGR WQQWYTPSDP PGRATLRDLP QGTRQGGPTT MNSYTRWSDI RTTHVERAGG EQAVEDGKQK LLATVVGHRL AEVRRTRGLT QQQVADRMGV TKGRISQIEQ GKISGQDIVA RYATALGGRL HQAIYFDDGN IAAIA
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