| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1639 |
|---|
| Symbol | |
|---|
| ID | 5058098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1865749 |
|---|
| End bp | 1867425 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640473912 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_001158482 |
|---|
| Protein GI | 145594185 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.58518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAACCC AACGTTACGA TTACGTCATC GTTGGTGGCG GTTCTGCCGG TAGCGCGCTC
GCCGACCGGA TCTCCGCCGA CCCGGGCAAC CGGGTTCTGG TCCTGGAGGC GGGGCGTCCC
GACTACCCGT GGGACGTCTT CATCCACATG CCGGCGGCGC TGCCGTTTCC GATCGGGAGC
CGGTTCTACG ACTGGCAGTA CAACTCGGAG CCGGAACCGC ACATGCACGG GCGGCGCATC
TACCACGCCC GGGGCAAGGT ACTGGGCGGG TCGAGCAGCA TCAACGGGAT GATCTTCCAG
CGGGGCAACC CGTTGGACTA TGAGCGGTGG GCCGCTGATC CGGGTATGGA GACCTGGGAC
TTCGCTCACT GTCTGCCGTA CTTCAACCGG ATGGAATCCG CCCTGGGGGC GGATCCGGAC
GACCCGTTCC GGGGCCACGA CGGTCCACTG GTGCTGGAGC GTGGCTCCGC GGAGAACCCG
GTGATCCAGG CCATGCTCGC GGCGGCGGAG CAAGCCGGCT ACCCGCGCAC CACCGACGTC
AACGGTGCGC AGCAGGAGGG TTTCGCCCCG TTTGACCGGA ACGTTCGTCG TGGTCGGCGG
TTCTCCGCGG CCCAGGCCTA CCTGCGCCCG GCGATGAAGC GACCCAACCT CGAGGTACGT
ACCCGCGCCT TCGTCACCCG CGTCATCTTC CAGGGCACCC GCGCCGTGGG TGTCGAGTAC
ACCCGCGGCC GGGGGACGAC TCCCCACCGG GTGTACGCCA ACGAGGTGAT CCTCAGCGGT
GGGGCGATCA ACACGCCGCA GTTGCTGCAA CTGTCCGGCG TGGGTAACGC CGACGAGCTG
CGCGGCCTGG GCATCGACAC CGTCGCGAAC CTGCCCGGGG TGGGCGAGAA CCTGCAGGAC
CACCTGGAGG TCTACATCCA GCACGCCTGC ACCCAGCCAG TGACGATCCA GCCCTACCTG
AACTGGCGAT ACGCGCCGTG GATCGGCGCT AAGTGGCTGT TCGGACGGAC GGGTCTGGGC
GCCACCAACC ACTTCGAGGC GGGGGGCTTC GTCCGGAGCA ACGACACCGT CGACTACCCG
AACCTGATGT TCCACTTCCT GCCGATCGCG GTCCGCTACG ACGGCACGTC CCCCGCCGGT
GACCACGGCT ATCAGGTGCA CATCGGGCCG ATGTACTCCG ACGCCCGCGG CTCGGTCAAG
ATCGTCAATC GTGACCCTCG GGTGCACCCG GCCCTGCGGT TCAACTACCT CTCCACCGAG
CAGGACCGAC GGGAGTGGGT GGAGGCGGTC CGGGTGACCC GCGACATCCT CGGCCAGCCG
GCGTTGGCGC CGTTCAGCGG TGGTGAGATC TCCCCCGGGC CCGAGGTCCA GACCGACGAG
GAGATCCTCG ACTGGGTCGC CCGCGAGGGG GAGACCGCGC TGCACCCGTC CTGCACGGCC
AAGATGGGGA CCGACGACAT GTCTGTGGTT GACCCCACCG ACATGCGGGT GCACGGGGTG
ACCGGGTTGC GGGTGGTGGA CGCCTCGGTG ATGCCCTACG TCACCAACGG GAACATCTAC
GCCCCGGTCA TGATGGTCGC CGAGAAGGCG GCGGACCTCA TCCTGGGCAA TACGCCGTTG
GCGCCGTCGC CACTCGACTA CTACCGGCAC GACCGCGGTT CGTCGGCGGT GGCATGA
|
|---|
| Protein sequence | MTTQRYDYVI VGGGSAGSAL ADRISADPGN RVLVLEAGRP DYPWDVFIHM PAALPFPIGS
RFYDWQYNSE PEPHMHGRRI YHARGKVLGG SSSINGMIFQ RGNPLDYERW AADPGMETWD
FAHCLPYFNR MESALGADPD DPFRGHDGPL VLERGSAENP VIQAMLAAAE QAGYPRTTDV
NGAQQEGFAP FDRNVRRGRR FSAAQAYLRP AMKRPNLEVR TRAFVTRVIF QGTRAVGVEY
TRGRGTTPHR VYANEVILSG GAINTPQLLQ LSGVGNADEL RGLGIDTVAN LPGVGENLQD
HLEVYIQHAC TQPVTIQPYL NWRYAPWIGA KWLFGRTGLG ATNHFEAGGF VRSNDTVDYP
NLMFHFLPIA VRYDGTSPAG DHGYQVHIGP MYSDARGSVK IVNRDPRVHP ALRFNYLSTE
QDRREWVEAV RVTRDILGQP ALAPFSGGEI SPGPEVQTDE EILDWVAREG ETALHPSCTA
KMGTDDMSVV DPTDMRVHGV TGLRVVDASV MPYVTNGNIY APVMMVAEKA ADLILGNTPL
APSPLDYYRH DRGSSAVA
|
|---|
| |