Gene Strop_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1552 
Symbol 
ID5058005 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1762674 
End bp1763822 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content73% 
IMG OID640473820 
Productnuclease SbcCD, D subunit 
Protein accessionYP_001158396 
Protein GI145594099 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.787205 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGATTC TGCACACCTC CGACTGGCAC GTTGGCAAGG TCCTCAAGGG GCGGTCCCGG 
GCCGAGGAGC ACAAGGCCGT CCTCGCCGGA GTGATCGAGG TGGCCCGGCG GGAGGCGCCG
GATCTGATCA TCATCGCCGG CGACCTCTAC GACACCGCCG CGCCCACCCC CGAGGCGACC
CGGTTGGTCA CCCGAGCGCT GACCGCGCTG CGCCGTACCG GCGCCGACGT CGTCGCGATC
GGCGGCAACC ACGACAACGG CGCCGCGCTG GACGCGCTGC GGCCCTGGGC CGAGGCCGCC
GGGATCACGC TGCGGGGCAG CGTGCGCGAA GATCCCAACG AGCACGTCAT CGACGGTACG
ACCAACGGCG GCGAACAGTG GCGGCTCGCC GCGCTGCCGT TCCTGTCCCA GCGGTACGCG
GTCCGGGCGG TGGAGATGTA CGAGCTGACC GCCGCCGAGG CGAACCAGAC GTACGCCGAC
CACCTGGGGC GGATCGTCGC CCGGTTGACC GAGAGCTTCG CCGAGCCGGA CCGGGTACAC
CTGGTCACCG CCCACCTGAC CGTGGTCGGG GCGACGACCG GCGGGGGCGA ACGGGATGCG
CACACCGTCC TCGGCTACGC GGTGCCGGCA ACGGTCTTCC CCGGTACCGC GCACTACGTC
GCGCTCGGCC ACCTGCACCG CGCCCAGCGG GTCGACGGCG GGTGCCCGAT CCGCTACAGC
GGCAGCCCGC TCGCGGTCGA CTTCGGCGAG CAGGAGAACG TCCCCTCGGT GACCGTGGTC
GAGGTGACCG CCACCACGGC GGCCCAGGTA CGGGAGGTTC CGATCCCCGC CGCCGCCTCC
CTGCGGACCG TCCGGGGCAC GCTCGCGCAG CTCGCCGAGG TCGAGGTGCC GGACGCCTGG
CTGCGGGTCT TCGTCCGGGA GCAGCCCCGG GCCGGCCTCC GCGAGGAGGT GCAGGAGCTC
CTCCCCCGCG CGCTGGAGAT CAGGATTGAT CCGGAGCTGG TGCCCGCGCC CGGCAGCGGT
ACCCGCGTCG CCCAGCGTGC CGGCCGGTCA CCGCGGGAGC TGTTCGGCGA CTACCTGGAC
GACCGGGGAC ACGCCGACGA CGACGTTCGG GGCCTCTTCG ACGAGCTGTT CGAGGAGGTC
GAGCACTGA
 
Protein sequence
MKILHTSDWH VGKVLKGRSR AEEHKAVLAG VIEVARREAP DLIIIAGDLY DTAAPTPEAT 
RLVTRALTAL RRTGADVVAI GGNHDNGAAL DALRPWAEAA GITLRGSVRE DPNEHVIDGT
TNGGEQWRLA ALPFLSQRYA VRAVEMYELT AAEANQTYAD HLGRIVARLT ESFAEPDRVH
LVTAHLTVVG ATTGGGERDA HTVLGYAVPA TVFPGTAHYV ALGHLHRAQR VDGGCPIRYS
GSPLAVDFGE QENVPSVTVV EVTATTAAQV REVPIPAAAS LRTVRGTLAQ LAEVEVPDAW
LRVFVREQPR AGLREEVQEL LPRALEIRID PELVPAPGSG TRVAQRAGRS PRELFGDYLD
DRGHADDDVR GLFDELFEEV EH