Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1552 |
Symbol | |
ID | 5058005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1762674 |
End bp | 1763822 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640473820 |
Product | nuclease SbcCD, D subunit |
Protein accession | YP_001158396 |
Protein GI | 145594099 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.787205 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAGATTC TGCACACCTC CGACTGGCAC GTTGGCAAGG TCCTCAAGGG GCGGTCCCGG GCCGAGGAGC ACAAGGCCGT CCTCGCCGGA GTGATCGAGG TGGCCCGGCG GGAGGCGCCG GATCTGATCA TCATCGCCGG CGACCTCTAC GACACCGCCG CGCCCACCCC CGAGGCGACC CGGTTGGTCA CCCGAGCGCT GACCGCGCTG CGCCGTACCG GCGCCGACGT CGTCGCGATC GGCGGCAACC ACGACAACGG CGCCGCGCTG GACGCGCTGC GGCCCTGGGC CGAGGCCGCC GGGATCACGC TGCGGGGCAG CGTGCGCGAA GATCCCAACG AGCACGTCAT CGACGGTACG ACCAACGGCG GCGAACAGTG GCGGCTCGCC GCGCTGCCGT TCCTGTCCCA GCGGTACGCG GTCCGGGCGG TGGAGATGTA CGAGCTGACC GCCGCCGAGG CGAACCAGAC GTACGCCGAC CACCTGGGGC GGATCGTCGC CCGGTTGACC GAGAGCTTCG CCGAGCCGGA CCGGGTACAC CTGGTCACCG CCCACCTGAC CGTGGTCGGG GCGACGACCG GCGGGGGCGA ACGGGATGCG CACACCGTCC TCGGCTACGC GGTGCCGGCA ACGGTCTTCC CCGGTACCGC GCACTACGTC GCGCTCGGCC ACCTGCACCG CGCCCAGCGG GTCGACGGCG GGTGCCCGAT CCGCTACAGC GGCAGCCCGC TCGCGGTCGA CTTCGGCGAG CAGGAGAACG TCCCCTCGGT GACCGTGGTC GAGGTGACCG CCACCACGGC GGCCCAGGTA CGGGAGGTTC CGATCCCCGC CGCCGCCTCC CTGCGGACCG TCCGGGGCAC GCTCGCGCAG CTCGCCGAGG TCGAGGTGCC GGACGCCTGG CTGCGGGTCT TCGTCCGGGA GCAGCCCCGG GCCGGCCTCC GCGAGGAGGT GCAGGAGCTC CTCCCCCGCG CGCTGGAGAT CAGGATTGAT CCGGAGCTGG TGCCCGCGCC CGGCAGCGGT ACCCGCGTCG CCCAGCGTGC CGGCCGGTCA CCGCGGGAGC TGTTCGGCGA CTACCTGGAC GACCGGGGAC ACGCCGACGA CGACGTTCGG GGCCTCTTCG ACGAGCTGTT CGAGGAGGTC GAGCACTGA
|
Protein sequence | MKILHTSDWH VGKVLKGRSR AEEHKAVLAG VIEVARREAP DLIIIAGDLY DTAAPTPEAT RLVTRALTAL RRTGADVVAI GGNHDNGAAL DALRPWAEAA GITLRGSVRE DPNEHVIDGT TNGGEQWRLA ALPFLSQRYA VRAVEMYELT AAEANQTYAD HLGRIVARLT ESFAEPDRVH LVTAHLTVVG ATTGGGERDA HTVLGYAVPA TVFPGTAHYV ALGHLHRAQR VDGGCPIRYS GSPLAVDFGE QENVPSVTVV EVTATTAAQV REVPIPAAAS LRTVRGTLAQ LAEVEVPDAW LRVFVREQPR AGLREEVQEL LPRALEIRID PELVPAPGSG TRVAQRAGRS PRELFGDYLD DRGHADDDVR GLFDELFEEV EH
|
| |