| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1546 |
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| Symbol | ligC |
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| ID | 5057999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 1755385 |
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| End bp | 1756494 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640473814 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001158390 |
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| Protein GI | 145594093 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.290467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCTGC CGATCAGTCC GCCGGTCGAG CCGATGCTCG CCAAGAGCGT CCCACGGATC
CCGACCGCGG ACGGGATGAC CTACGAGCCG AAGTGGGACG GCTTCCGGTG CATCGTGTTC
CGCGACGGCG AGGAGGTCGA GCTGGCCAGC CGGGGCGGCA AGCTGATGAC GCGTTACTTC
CCCGAGGTGG TCGAGCAGGC CCGCCGGCAG CTGCCCGAGC GCTGCGTGGT CGACGGCGAG
TTGATCGTGA TCCAGCGCGA TCGGCCGGAT GGGCAGCCCC AGCTCAACTT CGAGTTGCTG
GCCCAGCGCA TCCACCCGGC CGCCTCCCGG GTGCGCCTGC TCGCCGAAAC CACCCCGGCG
GACTTCGTGG CGTTCGACCT GCTCGCCCTC GCCGACGAGT CCCTCCTCGA CCAGCCGTAC
CCACATCGAC GGTCCCGACT GGAGGCGGCG TTGGGGCACG TCGCGCCACC GATGCACGTC
ACCCAGGTCA CCACCGACCC GGCCACCGCG CGCCGCTGGT TCGACCGGTT CGAGGGGGCG
GGGTTGGACG GCCTGATCGC CAAACCCGCC GAGCTGCCGT ACGAGCCGGG CAAACGCCTG
ATGTTCAAGG TCAAGCACAA ACGGACCGTC GATGTCGTGG TGGCGGGCTT TCGCTGGCAC
AAGTCCGGCC CGGTGGTCGG CTCACTTCTG CTCGGGCTCT ACGACGACGC CGGCGTCCTG
CATCATGTGG GGGTGAGCGC GTCGTTCCCC ATGGCCCGCC GGAAAGAGCT GTTGGACGAG
TTGGAGCCAT ACCGGGGCGC CGGGGCCGAC CATCCCTGGG TGCACGGCGA CCACGAACGC
GGTCAGCGCA TCCCGGGCGG GGTCAGCCGG TGGACCGGCG GGAAGAACCT GGAGTGGGAG
CCGCTGCGGC CGGAGCTGGT GGTCGAGGTG AGCTACGACG CGATGGAGGG CGACCGGTTC
CGACACACCG CCCAGTTCGT CCGGTGGCGC CCGGACCGCA AGCCCCGTTC CTGCCGTTAC
GACCAGCTCG ACCGTCCGGT CCGGTTCGAC GTGGATCAGG TGCTCCGAGG CGACCCGGAG
AACGGTGGTC CCACGTCCGG GCCGGCGTAG
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| Protein sequence | MKLPISPPVE PMLAKSVPRI PTADGMTYEP KWDGFRCIVF RDGEEVELAS RGGKLMTRYF
PEVVEQARRQ LPERCVVDGE LIVIQRDRPD GQPQLNFELL AQRIHPAASR VRLLAETTPA
DFVAFDLLAL ADESLLDQPY PHRRSRLEAA LGHVAPPMHV TQVTTDPATA RRWFDRFEGA
GLDGLIAKPA ELPYEPGKRL MFKVKHKRTV DVVVAGFRWH KSGPVVGSLL LGLYDDAGVL
HHVGVSASFP MARRKELLDE LEPYRGAGAD HPWVHGDHER GQRIPGGVSR WTGGKNLEWE
PLRPELVVEV SYDAMEGDRF RHTAQFVRWR PDRKPRSCRY DQLDRPVRFD VDQVLRGDPE
NGGPTSGPA
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