| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1545 |
|---|
| Symbol | |
|---|
| ID | 5057998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1753782 |
|---|
| End bp | 1755410 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640473813 |
|---|
| Product | TAP domain-containing protein |
|---|
| Protein accession | YP_001158389 |
|---|
| Protein GI | 145594092 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.322619 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCCCAC GTCCGGGCCG GCGTAGCCGG CTGCCCCGAC CCCGAAAGGT CCACCCCGTG
GTTCGCACTT CCGCCCGCCG GTTCGCCCCG GCCGTGCTCC TCCTGGCCAG CACGTTCCTC
GCCGCCGGCT GCACCCTTCC GGCGTTCGCG CCGCGCACCG AGGCGCAGCC CGCGGGGCCG
CCGGGCACCG CGCCGACCTG GCAGGCCTGT CCGGAGGTGG CCGAGGAGTT GGTCGGGCGT
ACCGCCCCGG GCATGCGCTA TGAGTGCACC CGGATCACGG TTCCCCGGAA CTGGGCTGAC
GGCGCCACTG CCACCTCCGG CCCGGGCGCC GGGGAGACCT TCGAAATCGC GCTGCTGCGG
GCCCGTTCGA TGAACCAGCG GGACCGGATC GGCTCGCTGC TGATCAACCC GGGCGGGCCG
GGCGGCTCCG GCGTGGACAC CGCCGTCTAC CTCTCCTTCC CGGCCGCGGT CGGCGGCCTG
CCCGCCTCGG TCACCGACCA CTTCGACATC GTCGGCTTCG ACCCGCGTGG GGTGGCTCGT
TCCAGCCCGG TGGAGTGCAT CTCGGACGCC AACCTCGACG CGAGCTTCGG CTACGACCCG
GACCCGGAGA GCCAGCAGTC CTTCGACGGT TTCGTCGAGC TGAACCAACG GATCGGGCGC
GAGTGTGGCG ACCGGTACGG CGACCAACTC GCGCTCTACA GCACGGAGCA GGCGGCCCAC
GACATCGAGG CGATCCGGGC TGCCGTCGGT GACGAGAAGG TGACCTACCT CGGCTACTCG
TACGGAACTC TACTCGGCGC CACCTACGCC CAGCTCCATC CGGAGCGGGT GCGGGCGCTG
GTGCTGGACG GGGCGATCGA CCCTCGACTG GACCTGGTAG CCAGCGCGGA GAGCCAGGCC
ATGGGCTTCG AGCGGGCGTT CGACAACTTC GCCCTGTGGT GCTCCACCAA CCCCGACCGC
TGCCCGATCG CTCCCGCCGC GCGGGACGCG GTCACCTCGG CCATCGACAA GGCGCGGGTC
TCCCCGGTCC TGGGCGACGA CGGGCGGGAG GCGACCCCGG GGTGGATCTT CTACGCGGTG
GTCTCCTCGC TCTACACCGA GGTCGGCTGG GAGCAGTTGG CCCAGGCGAT CGAGGAGTTG
GAGGACGGTG ACGCGACCGA GGTCTTCCGC CTCGCCGACG CGTACGCGGG TCGGGAGCCC
GACGGTACCT ACTCGAACCT GTTCGACGCG AACCTCGCGG TGAACTGCGC CGACGAGGAG
GAGAAGCCGA GCTGGGAGCA GATCCGGCAG CTCCAGTCGC AGTGGCGTGA GCAGTACCCG
CTGTTCGGTC CGGCGCTCGC GGTCGGCATG CTCGCCTGCA CCGAGTGGCC CGGCGGCCGG
GACCCGTACC CGACCGGGCC GGCTGATGGA GCCCCGCCGA TCCTGGTGGT CGGCACCACA
GGGGATCCGG CGACCCCCTA CGAGCAGACC CCGGCGCTGG CCGAGATGCT GGGCGTGGGC
CGGGTGCTCA CCTGGGAGGG CGAGGGGCAC ACCGCCTACC CTCAGACGGC CTGCATCAAC
GCGGCGGTTG ACGCGTACCT GGTTGACCTG ACCGTGCCGG CCGAGGGGAA ACGCTGCCCG
CCCCAGTGA
|
|---|
| Protein sequence | MVPRPGRRSR LPRPRKVHPV VRTSARRFAP AVLLLASTFL AAGCTLPAFA PRTEAQPAGP
PGTAPTWQAC PEVAEELVGR TAPGMRYECT RITVPRNWAD GATATSGPGA GETFEIALLR
ARSMNQRDRI GSLLINPGGP GGSGVDTAVY LSFPAAVGGL PASVTDHFDI VGFDPRGVAR
SSPVECISDA NLDASFGYDP DPESQQSFDG FVELNQRIGR ECGDRYGDQL ALYSTEQAAH
DIEAIRAAVG DEKVTYLGYS YGTLLGATYA QLHPERVRAL VLDGAIDPRL DLVASAESQA
MGFERAFDNF ALWCSTNPDR CPIAPAARDA VTSAIDKARV SPVLGDDGRE ATPGWIFYAV
VSSLYTEVGW EQLAQAIEEL EDGDATEVFR LADAYAGREP DGTYSNLFDA NLAVNCADEE
EKPSWEQIRQ LQSQWREQYP LFGPALAVGM LACTEWPGGR DPYPTGPADG APPILVVGTT
GDPATPYEQT PALAEMLGVG RVLTWEGEGH TAYPQTACIN AAVDAYLVDL TVPAEGKRCP
PQ
|
|---|
| |