| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1489 |
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| Symbol | |
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| ID | 5057942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1697751 |
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| End bp | 1699784 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640473757 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001158333 |
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| Protein GI | 145594036 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0395223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.661538 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTCCCGA CCGGACTGCG AGCTGTCGCA CGGCCGATAG ACTCTCCGGT CATGAGTGTT
GAACGGGACC CGGCAAACCA ACCGGGGCAG CTGGCCACCG TCAGCGGTCC GCAGGACATC
AAGCGGATGT CCACCGAGCA GCTGGACATC CTCGCCGCCG AAATCCGTGA CTTCCTGGTG
GCCAAGGTCT CCCGCACCGG CGGGCACATC GGCCCCAACC TGGGTGTGGT GGAGCTGACC
CTCGCGCTGC ACCGGGTCTT CGACTCCCCC CGGGACCGGA TCCTGTTCGA CACCGGCCAC
CAGGCCTACG TACACAAGAT TCTCACCGGC CGGCAGGGTG GCTTCGACAA GCTGCGCCAG
CGCGGTGGGC TCGCCGGCTA TCCGAGCCAG GCCGAGAGCG AGCACGACCT GATCGAGAAC
TCGCACGCCT CCACCGTCCT CTCCTACGCT GACGGGTTGG CCAAGGCGTA TGCGCTGCGG
GGCGAGTCCC GGGCGGTGGC GGCCGTGGTC GGTGACGGCG CGCTGACCGG CGGTATGTGC
TGGGAGGCGT TGAACAACAT CGCGACCACC CGCAACCCGT TGGTGATCGT GGTCAACGAC
AACGGTCGCT CCTACTCGCC GACCATCGGC GGGCTCGCCG ACCATCTCTC GACGCTGCGC
CTGAATCCCG GCTACGAGCG GGTGCTGGAC ACCGTCCGGG AGGCGCTCGG CTCGACCCCG
CTGGTCGGCC GGCCGATGTA CGAGGTGCTG CACGCGGTCA AGCGGGGCAT CAAGGACGCG
GTCGCCCCGC AGGCGATGTT CGAGGACCTC GGCATCAAGT ACGTCGGCCC GGTGGACGGG
CACGACCTGG AGGCGGTCGA GGGGGCGCTG CGCGCGGCGA AGAACTTCGG CGGCCCGGTG
ATCGTGCACG CGGTCACCCG CAAGGGCTAC GGCTACCGCC CGGCCGAGGA GGACGAGGCG
GACTGTTTCC ACAGCCCCGG TGCCTTCGAC ACCGAGACCG GCAAGGCCAC CGCGACGCCG
TCGGTGAAGT GGACCCACGT CTTCGCCGAG GAACTGGTCG CGATCGCCGA CGAGCGGCCG
GACGTGGTAG GAATCACCGC CGCGATGGCC GAGCCGACCG GCATCGCCAA GCTGGCCCGG
AAGTACCCGG AGCGCACCTA CGACGTGGGC ATCGCCGAGC AGCACGCCGC CACCTCGGCG
GCGGGGCTGG CGCTGGGCGG TCTGCACCCG GTGGTCGCGG TCTACGCGAC CTTCCTCAAC
CGGGCGTTCG ACCAGGTCCT GCTGGACGTG GCGATGCACA AGCTGCCGGT GACCTTCGTG
CTGGACCGGG CCGGGATCAC CGGCCCGGAC GGGCCCAGCC ACTACGGCAT GTGGGACATG
TCTGTCTTCG GGGTGGTGCC GGGCCTGCGG CTCGCCGCCC CCCGGGACGC CGCCACCCTC
CGCGAGGAGC TGCGCGAGGC GGTCGCCGTG GACGACGGTC CCACCATCGT CCGCTTCCCG
ACCGGTTCCG TCGCCGCCGA CCTGCCGGCG CTGCGCCGGG TCGGTCCGGT GGACGTGCTC
GCCGAGTCGA CCCGCGCCGA CGTGCTGCTG GTCGCGGTCG GCTCCTTCGG CGGTCTCGGC
GTGGAGGTCG CCGCCCGGGT CGGCGAGCAG GGCTACGGCG TGACCGTGGT TGACCCCCGC
TGGGTCCGGC CGGTCCCGGA CGAACTGGTG GAAATGGCCG CCGGGCATCG GCTCGTGGTC
ACCGTGGAGG ACGGGGTTCG GGCCGGCGGC GTCGGTGACG CCATCGCCCA GGCGATGCGG
GACGCCGACG TCGAGGTGCC GGTGAAGGAC CTGGGCGTAC CGGTCGACTG GCACCCGTAC
GGCACCCGCG CCCAGATTCT CACCGACCTC GGCCTGACCG CCCAGGACGT GGCCCGCGAC
GTCACCGGCT GGATCTCCCG GCTCGACGTC GACGCCGCCG GTACCGAGAA GGAGCTGGTC
TCCGACCAGG TGGAGCCGAT CCTCGCCCCG CGCGAGGCCC CCGCCCCGAA GTGA
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| Protein sequence | MLPTGLRAVA RPIDSPVMSV ERDPANQPGQ LATVSGPQDI KRMSTEQLDI LAAEIRDFLV
AKVSRTGGHI GPNLGVVELT LALHRVFDSP RDRILFDTGH QAYVHKILTG RQGGFDKLRQ
RGGLAGYPSQ AESEHDLIEN SHASTVLSYA DGLAKAYALR GESRAVAAVV GDGALTGGMC
WEALNNIATT RNPLVIVVND NGRSYSPTIG GLADHLSTLR LNPGYERVLD TVREALGSTP
LVGRPMYEVL HAVKRGIKDA VAPQAMFEDL GIKYVGPVDG HDLEAVEGAL RAAKNFGGPV
IVHAVTRKGY GYRPAEEDEA DCFHSPGAFD TETGKATATP SVKWTHVFAE ELVAIADERP
DVVGITAAMA EPTGIAKLAR KYPERTYDVG IAEQHAATSA AGLALGGLHP VVAVYATFLN
RAFDQVLLDV AMHKLPVTFV LDRAGITGPD GPSHYGMWDM SVFGVVPGLR LAAPRDAATL
REELREAVAV DDGPTIVRFP TGSVAADLPA LRRVGPVDVL AESTRADVLL VAVGSFGGLG
VEVAARVGEQ GYGVTVVDPR WVRPVPDELV EMAAGHRLVV TVEDGVRAGG VGDAIAQAMR
DADVEVPVKD LGVPVDWHPY GTRAQILTDL GLTAQDVARD VTGWISRLDV DAAGTEKELV
SDQVEPILAP REAPAPK
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