Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1463 |
Symbol | |
ID | 5057916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1667471 |
End bp | 1668469 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640473731 |
Product | RNA polymerase sigma factor SigB |
Protein accession | YP_001158307 |
Protein GI | 145594010 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.662899 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.13568 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCTGC AGATGATGGA TCACGGGATG CGCCCCACCA GCGGCGCCGA CACCCTCACC GATCTGGATG CCACTGACGA GCGCGGTGTC TCCACCGATC TGGTCCGGGC CTACCTCCAG GGCATCGGCA GGACGAAACT GCTGACCGCC GCCCAGGAGG TCGAACTGTC CCGCCGGATC GAGGCCGGGC TCTTCGCCGC GACCAAGTTA GCCACCTGCA CGCCGGTCTC CGTCGCGCTC CGCGCCGACC TGGAGCTCGT CGCCGCCGAG GGGCGCGCCG CCAAGGATCA CCTGCTGGAG GCGAACCTTC GCCTGGTCGT CAGCATCGCC AAGCGCTACA CCGGCCGTGG GATGGCCTTC CTCGACCTGA TCCAGGAGGG CAACCTCGGC CTGATCCGCG CGGTCGAGAA GTTCGACTAC ACCAAGGGCT ACAAGTTCTC CACCTACGCC ACCTGGTGGA TCCGCCAGGC CATTACCCGC GCCATGGCCG ACCAGGCCCG CACCATCCGC ATCCCGGTAC ACATGGTCGA GCAGGTCAAC CGCATGGTGC GGACCCGGCG CGAGCTGTCG GTCTCGCTGG GCCGCGAGCC CACGGTCGCG GAGGTGGCGC GGACGCTGGA CATCCCGGAA ATCCAGGTGA TCGAGCTGAT CTCCTACGAC CGTGAACCGG TCAGCCTGGA CCAGACCGTC GGCGAAGACG GCGAGAGCCC GCTCGGCGAC TTCGTCGCCG CGGTGGACTC GACGGCCGGG ACCGACGACA CCGTCAGCGG TGGCGAGTTG CGCCAGGAGA TGTGCGGTGT GCTCGCCACC CTCTCCCAGC GGGAGCAGGC GGTGATCCGG CTCCGGTTCG GTCTGGACGA CGGGCGGCAA CGCACCCTGG ACGAGGTCGG TCGGGAATTC GGCCTGTCCC GAGAGCGGAT CCGCCAGATC GAGAAGGGGA CACTGCACAA GCTACGCGCC CCGGAGCGGG CACAGCGGTT GGAGGCGTAC GCCTGCTGA
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Protein sequence | MALQMMDHGM RPTSGADTLT DLDATDERGV STDLVRAYLQ GIGRTKLLTA AQEVELSRRI EAGLFAATKL ATCTPVSVAL RADLELVAAE GRAAKDHLLE ANLRLVVSIA KRYTGRGMAF LDLIQEGNLG LIRAVEKFDY TKGYKFSTYA TWWIRQAITR AMADQARTIR IPVHMVEQVN RMVRTRRELS VSLGREPTVA EVARTLDIPE IQVIELISYD REPVSLDQTV GEDGESPLGD FVAAVDSTAG TDDTVSGGEL RQEMCGVLAT LSQREQAVIR LRFGLDDGRQ RTLDEVGREF GLSRERIRQI EKGTLHKLRA PERAQRLEAY AC
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