Gene Strop_1463 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1463 
Symbol 
ID5057916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1667471 
End bp1668469 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content69% 
IMG OID640473731 
ProductRNA polymerase sigma factor SigB 
Protein accessionYP_001158307 
Protein GI145594010 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.662899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.13568 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTGC AGATGATGGA TCACGGGATG CGCCCCACCA GCGGCGCCGA CACCCTCACC 
GATCTGGATG CCACTGACGA GCGCGGTGTC TCCACCGATC TGGTCCGGGC CTACCTCCAG
GGCATCGGCA GGACGAAACT GCTGACCGCC GCCCAGGAGG TCGAACTGTC CCGCCGGATC
GAGGCCGGGC TCTTCGCCGC GACCAAGTTA GCCACCTGCA CGCCGGTCTC CGTCGCGCTC
CGCGCCGACC TGGAGCTCGT CGCCGCCGAG GGGCGCGCCG CCAAGGATCA CCTGCTGGAG
GCGAACCTTC GCCTGGTCGT CAGCATCGCC AAGCGCTACA CCGGCCGTGG GATGGCCTTC
CTCGACCTGA TCCAGGAGGG CAACCTCGGC CTGATCCGCG CGGTCGAGAA GTTCGACTAC
ACCAAGGGCT ACAAGTTCTC CACCTACGCC ACCTGGTGGA TCCGCCAGGC CATTACCCGC
GCCATGGCCG ACCAGGCCCG CACCATCCGC ATCCCGGTAC ACATGGTCGA GCAGGTCAAC
CGCATGGTGC GGACCCGGCG CGAGCTGTCG GTCTCGCTGG GCCGCGAGCC CACGGTCGCG
GAGGTGGCGC GGACGCTGGA CATCCCGGAA ATCCAGGTGA TCGAGCTGAT CTCCTACGAC
CGTGAACCGG TCAGCCTGGA CCAGACCGTC GGCGAAGACG GCGAGAGCCC GCTCGGCGAC
TTCGTCGCCG CGGTGGACTC GACGGCCGGG ACCGACGACA CCGTCAGCGG TGGCGAGTTG
CGCCAGGAGA TGTGCGGTGT GCTCGCCACC CTCTCCCAGC GGGAGCAGGC GGTGATCCGG
CTCCGGTTCG GTCTGGACGA CGGGCGGCAA CGCACCCTGG ACGAGGTCGG TCGGGAATTC
GGCCTGTCCC GAGAGCGGAT CCGCCAGATC GAGAAGGGGA CACTGCACAA GCTACGCGCC
CCGGAGCGGG CACAGCGGTT GGAGGCGTAC GCCTGCTGA
 
Protein sequence
MALQMMDHGM RPTSGADTLT DLDATDERGV STDLVRAYLQ GIGRTKLLTA AQEVELSRRI 
EAGLFAATKL ATCTPVSVAL RADLELVAAE GRAAKDHLLE ANLRLVVSIA KRYTGRGMAF
LDLIQEGNLG LIRAVEKFDY TKGYKFSTYA TWWIRQAITR AMADQARTIR IPVHMVEQVN
RMVRTRRELS VSLGREPTVA EVARTLDIPE IQVIELISYD REPVSLDQTV GEDGESPLGD
FVAAVDSTAG TDDTVSGGEL RQEMCGVLAT LSQREQAVIR LRFGLDDGRQ RTLDEVGREF
GLSRERIRQI EKGTLHKLRA PERAQRLEAY AC