| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1403 |
|---|
| Symbol | |
|---|
| ID | 5057856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1576170 |
|---|
| End bp | 1577018 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473672 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001158248 |
|---|
| Protein GI | 145593951 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.425851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACAGTC TCGCGGGTTT CCTGCGGACC CGGCGTTCCC GGGTCGATCC GGCGACTTTC
GGCATCCCCA TCGACCGGCA TCGCCGGGTC CAGGGGCTAC GCCGCGAGGA GGTCGCGCAC
CTGTCCGGAG TCAGCGTCGA CTACTACGTC CGTTTGGAGC AGGGCCGCGC GACCCAGCCC
TCCGATCAGG TCCTCGACGC ACTCGCGCGC GTCCTCGGCC TCGACGAGAC CGAACGCGGG
CACCTGCACC GACTCGCCCG GCAGCGCCGC CACCGCGCGC GGATGCCGGC TGGGCGGGTC
CGGCCGGAGT TGCTCCGCGT CGTCGACCTG ATGGCCGACG CACCCGTACT GATCATGAAT
CATCGTCTGG ACGTGCTCGC CGGCAACCGC CTCGCCCGGC TCCTCTACGG CCTGCCGATG
CCGGGCTTGA ACACCGCCCG GCACGTCTTC CTTGAGGAGA AAGAGCGCGG CCTGTACGCC
GACTGGGAGG CGTGCACCCT CATCGTGGTC GGGCACCTGC GCCTGGCTGC CGGCAAGTAC
CCCGCGGAGC CCCGCCTCAC CTCGCTCATC GGCGAACTGG CAATGAGCAG CGAACGCTTC
CGCGGGCTCT GGGCACGTGC AGACGTACGC GCCCGCCCCC ACGGACGGCG GTCCTACCGG
CACCCGCTGG TCGGGCTGCT GGAACTGCAC CAGGAAAGCC TCGTGCCACC GGACGACTCC
GGTGTGGAAC TGCTGGTACT GTCCGCCTCT CCCGGCAGCC CCAGTGCGGA TGGGCTACGC
CTCCTCGCTG GCCTGGACAG GGACGACGTG GCGGGCTGGC CTAGAAAGGG ACGATTGGGC
ACTTCCTAA
|
|---|
| Protein sequence | MDSLAGFLRT RRSRVDPATF GIPIDRHRRV QGLRREEVAH LSGVSVDYYV RLEQGRATQP
SDQVLDALAR VLGLDETERG HLHRLARQRR HRARMPAGRV RPELLRVVDL MADAPVLIMN
HRLDVLAGNR LARLLYGLPM PGLNTARHVF LEEKERGLYA DWEACTLIVV GHLRLAAGKY
PAEPRLTSLI GELAMSSERF RGLWARADVR ARPHGRRSYR HPLVGLLELH QESLVPPDDS
GVELLVLSAS PGSPSADGLR LLAGLDRDDV AGWPRKGRLG TS
|
|---|
| |