Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1352 |
Symbol | ispG |
ID | 5057805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 1518099 |
End bp | 1519271 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640473621 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_001158197 |
Protein GI | 145593900 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.964286 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.816365 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACCGCTG TCAGTCTCGG TATCCCCGCC GTACCGCCGC CGCCGCTCGC GCCCCGTCGC GCGAGCCGTC AGATCATGGT CGGTTCGGTG CCGGTCGGTG GGGGCGCGCC GGTGTCGGTG CAGTCGATGA CCACCACGCT CACCGCCGAC GTGAACGCCA CGCTCCAGCA GATCGCCGAG CTGACCGCCG CCGGCTGCCA GATCGTTCGG GTCGCCGTAC CGAGCCAGGA CGATGTCGCG GCGTTGCCGG CGATCGCCCG CAAGTCGCAG CTCCCGGTGA TCGCCGACAT CCACTTCCAG CCCCGGTACG TCTTCGCCGC GATCGAGGCC GGCTGCGCGG CGGTACGGGT GAACCCGGGC AACATCCGGC AGTTCGACGA CAAGGTCAAG GAGATCGCGA AGGCAGCCGG TGACGCGGGC GTACCGATCC GGATCGGCGT GAACGCGGGC TCGCTGGACA AGCGACTGCT GGCCAAGCAC GGCAAGGCGA CCGCGGAGGC GCTGGTCGAG TCGGCGCTGT GGGAGTGCTC GCTCTTCGAG GAGCACGGCT TCCGGGACAT CAAGATCTCG GTGAAGCACA ACGACCCGGT GGTGATGGTC CGGGCCTACC GGCAGCTCGC CGAGGCGTGC GACTACCCGC TGCACCTCGG GGTCACCGAG GCCGGGCCGG CGTTCCAGGG CACCATCAAG TCGTCGGTGG CCTTCGGCGC GCTGCTCGCC GAGGGGATCG GGGACACCAT CCGGGTGTCG CTCTCCGCTC CGCCGGTAGA AGAGATCAAG GTCGGCGCCG CGATCCTGGA GTCGCTCGGC CTGCGCGAGC GCGGTCTGGA GATCGTCTCC TGCCCGTCCT GCGGCCGGGC CCAGGTCGAC GTGTACAAGC TCGCCGAGGA GGTCACCGCC GGCCTGGAGG GGCTACCGGT GCCGCTGCGG GTCGCCGTGA TGGGCTGCGT CGTCAACGGC CCCGGTGAGG CGCGGGAGGC CGACCTGGGG GTGGCCTCCG GCAACGGCAA GGGCCAGATC TTCGTCAAGG GCCAGGTCAT CAAGACCGTC CCGGAGGGTC AGATCGTGGA GACCCTCATC GAGGAGGCGC TCCGCCTCGC CGAGGAGATG GGTGCCGAGC TCCCCGAGGA GCTGCGGAGC CTGGCCGGCG GCGCCACCGT GACCGTGCAC TGA
|
Protein sequence | MTAVSLGIPA VPPPPLAPRR ASRQIMVGSV PVGGGAPVSV QSMTTTLTAD VNATLQQIAE LTAAGCQIVR VAVPSQDDVA ALPAIARKSQ LPVIADIHFQ PRYVFAAIEA GCAAVRVNPG NIRQFDDKVK EIAKAAGDAG VPIRIGVNAG SLDKRLLAKH GKATAEALVE SALWECSLFE EHGFRDIKIS VKHNDPVVMV RAYRQLAEAC DYPLHLGVTE AGPAFQGTIK SSVAFGALLA EGIGDTIRVS LSAPPVEEIK VGAAILESLG LRERGLEIVS CPSCGRAQVD VYKLAEEVTA GLEGLPVPLR VAVMGCVVNG PGEAREADLG VASGNGKGQI FVKGQVIKTV PEGQIVETLI EEALRLAEEM GAELPEELRS LAGGATVTVH
|
| |