| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1292 |
|---|
| Symbol | |
|---|
| ID | 5057745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1454139 |
|---|
| End bp | 1454762 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640473564 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001158140 |
|---|
| Protein GI | 145593843 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.212665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCGGG AACGAGCGAC GGCGCTGTTG GTGGACTTCG ATGGGGTGCT GCGCCGCTGG
GACCCGGCGG TCGCTGCCGG CGTCGAGCGG GCGTACGGGC TCACCGAAGG TGTCCTCGGC
GAGATCGCGA TGTCCTGGGG GCTGCTTCAG CCGGTCCTGA CCGGGCGGGT GAACCACGCC
GAGTGGATGG CCAGCGTGGC CGCGGCGCTG GCCCCGTCGG TGGGGGAGCA GCAGGCCCAG
GCGGCCGTGG ACGAGTGGCA GCGCTACCGG GGCGAGGTCG ACCCGCAGGT GCTGACGTTC
GTCCGGGAGG TCCGGGCGTC CGGAGTCCCG GTCGGGCTCG CCACGAACGC CACCGACGTG
CTCGATGCCG ACCTCGCCGC TCTCGGGCTC GAGGGTGAGC TGGATGCCGT GGTCAACTCG
TCGGTCGTCG GCGTACACAA GCCGGCAACG GAGTACTTCC AGGCGGCCTG CGAGGCGCTG
CACACCCCGC CGTCGCGGGT GCTGCTCGTC GACGACGACG ACCGGGTGAT CGCGGGGGCC
CGGGTGGCCG GCCTGTCGGC GCATCGCTGG AGCGGCCCCG GCGACCTGCG CTACCTGCGG
GCCGCCCTGG CCCCGAACGG CTGA
|
|---|
| Protein sequence | MSRERATALL VDFDGVLRRW DPAVAAGVER AYGLTEGVLG EIAMSWGLLQ PVLTGRVNHA
EWMASVAAAL APSVGEQQAQ AAVDEWQRYR GEVDPQVLTF VREVRASGVP VGLATNATDV
LDADLAALGL EGELDAVVNS SVVGVHKPAT EYFQAACEAL HTPPSRVLLV DDDDRVIAGA
RVAGLSAHRW SGPGDLRYLR AALAPNG
|
|---|
| |