| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1289 |
|---|
| Symbol | |
|---|
| ID | 5057742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1448267 |
|---|
| End bp | 1449598 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640473561 |
|---|
| Product | Allergen V5/Tpx-1 family protein |
|---|
| Protein accession | YP_001158137 |
|---|
| Protein GI | 145593840 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.323784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTACGGCT GGAACGACCC GAGGAACCCA GACGGTAGCC GTCGGCAACC CGAACCGGCG
GCCGATGAAC CAGCGTGGCC GACAGACCGC CCGGAGCCAC GCTCCGCCTA CCTGTTCGGT
GACGAGCCGG ATGGACCTCC TCACCGATGG GAGCCCACCG ACCGACGGGA GCAGCCCACC
GACGAGTGGG ACCGACAGCA GCCGACCGCG CACTGGCGGT CGGACGCCGA GCCCGCGCGA
GGCTGGGGAG CCGCGGAGCA CCCGTACCAC GGTCCCGTCG GTGACCCCTA CCACGAACAG
CCCACGCAGG GCTGGGAAGC CACCCCGACC TGGCAGCACG GAGAGCCCAC CCAGAACTGG
CAGCGGGAGC AGCCGGGCGA CCGGCCCGAC CAGCGGTTCG CGGGCGGACG GAACGAGCCC
ACCGGTAGCT GGCACGGCGC GGCCACCCCC ACCGGCGGGC CCGAGCCCAC CGGCCAGTGG
CAGGCCCCGG AGCCGACCGG CTGGTACGCC GACGAACCAA CGACCAGCAT GCCGTCCCTC
GCGGAAGCCG CAGCCGCCGG TGACGTGCCC GCCGGCGAGG ATCGGCCCCG TCGTCGGCAC
CGGCGACCGC TGCTCATCGG CGGAGCCGCG GCGGCAGCCA CACTGGTGGT GAGCCTCGGG
GTCGGCGCCG TTACCTTCGC CGGTGGCGGT GACGCCAGCC CCACCTCGGC CATCGACGAC
ATCGTGGCGA CGAACCCGAC CGAGGAGAGT GCGTTTCCCA GCGGCACGCC GACCTCGGCC
AGCCCCAGCG CCACGCCGAC CACGACGTCG CCATCACCGT CACCGTCGGT CACGCCGAGT
CGCAAGCCGA GCCCGACGGC CTCGCGCTCC ACCGCCGCCC CCCGGCCCAC CCCGAACCGC
ACCACCGCGC CCCCCACCAA CAGCACCACC GCGCCCGCCA ACGGCAACGT CAGCGAAGAC
GCGGCCGAGG TGGTTCGGCT GGCCAACATT GAGCGCAAGG AGGCCGGCTG CGCGGCGTTG
AGCATCGACG ACAAGCTGAT GACCGCAGCC CAGCGGCACA GCCAGGACCA GGCCGACAAC
CGGAAGATGT CACACGACGG CAGCAACGGC AGTAGCCCCG GAGACCGCAT CGACGATGTC
GGCTACCAGT GGCGCACCTA CGGGGAGAAC GTCGCCTGGA ACCAGCAGTC GCCCGCCGCG
GTGATGAAGG CGTGGATGAA CAGCTCCGGC CACCGGGCGA ACATCCTGAA CTGCTCCTTT
ACCGAAATCG GGATCGGCAT CGCGACCAGC AACGGACCCT ACTGGACGCA GGTCTTCGCC
GCGCCCCGTT GA
|
|---|
| Protein sequence | MYGWNDPRNP DGSRRQPEPA ADEPAWPTDR PEPRSAYLFG DEPDGPPHRW EPTDRREQPT
DEWDRQQPTA HWRSDAEPAR GWGAAEHPYH GPVGDPYHEQ PTQGWEATPT WQHGEPTQNW
QREQPGDRPD QRFAGGRNEP TGSWHGAATP TGGPEPTGQW QAPEPTGWYA DEPTTSMPSL
AEAAAAGDVP AGEDRPRRRH RRPLLIGGAA AAATLVVSLG VGAVTFAGGG DASPTSAIDD
IVATNPTEES AFPSGTPTSA SPSATPTTTS PSPSPSVTPS RKPSPTASRS TAAPRPTPNR
TTAPPTNSTT APANGNVSED AAEVVRLANI ERKEAGCAAL SIDDKLMTAA QRHSQDQADN
RKMSHDGSNG SSPGDRIDDV GYQWRTYGEN VAWNQQSPAA VMKAWMNSSG HRANILNCSF
TEIGIGIATS NGPYWTQVFA APR
|
|---|
| |