Gene Strop_1259 details

Gene Information

• Locus tag: Strop_1259
• Symbol: leuD
• ID: 5057712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salinispora tropica CNB-440
• Kingdom: Bacteria
• Replicon accession: NC_009380
• Strand: +
• Start bp: 1421669
• End bp: 1422256
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640473531
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_001158107
• Protein GI: 145593810
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.0512287
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.692541
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAGAAGT TCACTATCCA CACCGGTACC GCCGTGCCGC TACGTCTTTC TAATGTAGAT 
ACTGATCAGA TTATCCCGGC TGTGCACCTA AAGCGGGTAA CGCGAACGGG TTTCGCGGAT 
GCCCTGTTCA GTTCGTGGCG GGAGGATCAG GCGTTTGTCC TCAACGATGA ATCATATTCG 
GGTGCCTCGA TTCTTGTTGC TGGCCCCGAG TTCGGTACCG GTTCCTCCCG AGAGCACGCC 
GTCTGGGCCT TGCGAGACTG GGGGTTCCGG GTCGTGATCG CCCCGCGCTT CGGTGACATC 
TTCCGGGGTA ACGCGCTCAA GGGAGGACTG CTGCCGGTTG AGTTGGAATT GAAAGCAATC 
GAAGAGATCT GGGGTCGCAT CGAGGCCGAT CCGAGCACGT CGATCACCGT CGACCTCGCC 
GCCCGTCAGG TTCAGGTCGG GGGTGTGAAC TGGGGGTTCC CGCTCGACGA GTTCAGCCGC 
TGGCGGCTGA TGGAGGGCTT GGACGACATT GGACTCACGC TTCGGCACGA ACCCCTGATC 
GGTGCCTTCG AGGCGTCTCG GCAGCCGTTC CTACCGACCA TCGCGTAG 

 

Protein sequence

MEKFTIHTGT AVPLRLSNVD TDQIIPAVHL KRVTRTGFAD ALFSSWREDQ AFVLNDESYS 
GASILVAGPE FGTGSSREHA VWALRDWGFR VVIAPRFGDI FRGNALKGGL LPVELELKAI 
EEIWGRIEAD PSTSITVDLA ARQVQVGGVN WGFPLDEFSR WRLMEGLDDI GLTLRHEPLI 
GAFEASRQPF LPTIA