Gene Strop_1257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1257 
Symbol 
ID5057710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand- 
Start bp1419474 
End bp1420160 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content74% 
IMG OID640473529 
Productregulatory protein, IclR 
Protein accessionYP_001158105 
Protein GI145593808 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.411018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.348554 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGTG TCGGCGTTCT CGACAAGGCG GTGGTCATCC TGGCCGCCTG CGTGGACGGC 
GCCAGCCTGG CCGAACTCGT CGAACGCACA AAGCTGCCCC GGGCAACAGC ACACCGGTTG 
GCGCAGGCAC TGGAGATCCA CCGAATGCTG GTACGCGACA CACAGGGACG GTGGCGCCCC 
GGCCCCCGCC TGGGGGAACT GGCCAACGCC GCACCCGACG TGCTGCTGAC CGCGGCCGAG 
CCCCTGCTCT GCGCGCTCCG GGACGCCACC GGGGAGAGCG CGCAGCTCTA CCTGCGCCGG 
GCCGACGAGC GGGTCTGCGT AGCCGCCGCC GAGCGGGCCA GCGGCCTGCG GGACACCGTG 
CCGGTCGGCT CGGTGCTACC CATGACGGCC GGATCCGCGG CGCAGATCCT GCTGGCCTGG 
GAGCCACCGG AGGCGGTCAT GCCGCTCCTG CCCCGCTCGA AGTTCACCGG CCGGGCTCTC 
GCCGAGGTCC GGCGCCGCGG CTGGGCGCAG AGCGTGGCGG AACGGGAAGC TGGTGTGGCG 
AGCGTCTCCG CACCGATCCG GGATCGCACC GGGCGAGTCA TCGCCGCCGT CAGCGTCAGC 
GGTCCCATCG AACGAATCGG CCGCCGCCCC GGCGAGCGCC ACGCGATGGC GGTCGTTCGA 
GCCGGCCAAC GGCTCTCCGG CCTGTAG
 
Protein sequence
MSGVGVLDKA VVILAACVDG ASLAELVERT KLPRATAHRL AQALEIHRML VRDTQGRWRP 
GPRLGELANA APDVLLTAAE PLLCALRDAT GESAQLYLRR ADERVCVAAA ERASGLRDTV 
PVGSVLPMTA GSAAQILLAW EPPEAVMPLL PRSKFTGRAL AEVRRRGWAQ SVAEREAGVA 
SVSAPIRDRT GRVIAAVSVS GPIERIGRRP GERHAMAVVR AGQRLSGL