| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1232 |
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| Symbol | |
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| ID | 5057682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1391195 |
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| End bp | 1393375 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640473501 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001158080 |
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| Protein GI | 145593783 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.17145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.473143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGCCG TCATCGGTCT GGTTGCGGTC GTAGCCGGCG TGGCGGTGAT GGTGACCGCT
GCCGGGCAGC CGAAGCCGGT CCCTTCGGTC GGCTGGGCCG AGGTGGTCTC CCTGGCCGCC
GCGACCAGCG GGCTGCTTTT CGGGACGGGG CTGCTCTGCC TCCCCGGCAT GGCCCCCACC
GTCGGCGCGG CCACCCGGCT GTCGCTGGAC GGGCTGATCA TCGCCGTCGC GGTCTGGTTC
GTCGGCTGGG TGCTCGTCGC CGAGCCGACC CGGCTGCTCG GTTCTGCCCC GGTGGTCGGC
GCGCCGATCC TGCTCGCGAC CGCCAGCGCG GCACTGATCG TGGGCCTCGC CACCGTCGTG
GTGTTTCGGG TCTCGTCGCC GCGGCGCCGG CTCGGCGCGC TCGCCGGCGG CTCCGCCGCG
ACGACCGTCG GTGGGCTCGG CGTCGCCACC GGGCTGTTCC AGGCCGACGA GGGGCTGGCG
GTGGGCGGAG CGGCGGTGGC TGTCGCCGGC CTGCTGACCG TGGCGCTGGT GCTTCGCGGG
TTCGATCGCC CCTGCGAGTC GGACATCGAC CCGACCCGGC GCGAGGGGGA GCATGCGGTC
CTGCCGATAC TCGCGATGGC CGTCTCGGCG GTGTACCACC ATCTTCAGGA TGGCCGCTTC
GGTCCGTACG GCGTGGCTGC TTTCAGCGTC GGGGGCTTCG CCCTGGTCGC CCGGCAGTAC
CTGACCCTGC ACGATGTCCG CCGGTACGCG CGTCGGCTGG TCGAGGGGGA GGCGCACTTC
CGGGAGTTGG CACACACCGA CGCGCTGACC GGCCTGGCGA ACCGGCGGGG ACTGCTGCGG
GACCTGCATC GCTGCGCGGA ACGGGGCACC GGGTGCGTCC TGTTCCTGCT CGATCTGGAT
GGTTTCAAGA ACGTCAACGA CGTGCGTGGA CACGACGCCG GGGACGCTGT CCTGGCCGAG
GTGGGCCGGC GGCTACGCGG TCCCCTGCGC TCCGGCGACG TGGCGGCCCG GCTCGGTGGG
GACGAGTTCG CTGTGCTGTT GCCCGGCCCC CCGCCCACCA CCGACCAGGT GGGGGAGCGA
CTCCTCGCGG CGCTGGGAGC CGCGTACGAA CTGCCCGAGG GGCCGGTCTT CCTCTCGGCG
AGCATCGGCA TCGCCGGCTG GGCTGGCCAA CCCGATGTTG AGCTGTTGCT GCGCCACGCC
GACCTGGCCC TGCGCTACGC CAAGCAGCGC GGCAAGAATC GGTTCGAGCG GTACGACGTC
GCCTATGACC AGCTGTTGAG CCGGCGGGCC ACGCTGGAGC ACGAGCTGCG GGGTGCGATC
GAACGCGACG AGCTGCGGCT GGTGTTCCAG CCGGTGGCGT CGCTGCCCTC CGTGCGCCCG
GTCGGCGCCG AGGCCCTGCT CCGGTGGCGT CATCCGGAGC TGGGCGCGGT CCGGCCGGAT
GAGTTCATCC CGCTCGCCGA AGAGTGCGGC ATGATCGCCA AGCTGGGGGC GTGGGTGCTG
GACCAGGCCT GCTATCAACT CTCTCGTTGG CTCGCCGACG GACATGACGT CTGGGTGTCG
GTCAATGTGT CGCCTCGAGA GCTACACGCG CCGGCGTACG TCGGCCAGGT CACTGACGCG
TTGCGCGTAC ACCGGGTTCC GCCGCAGCGT CTGGTGCTGG AGGTCACCGA GCACGCCGTC
GCGACCGATC TGGACGAGCT GATCCGGCGG TTGACGGCGC TGCGCCGGAC CGGCGTTCGG
ATCGCGTTGG ATGACTTCGG CGCCGGCTAC TCCTCCCTCG GCCAGCTTCG TCGGCTCCCG
CTCGACATCC TCAAGATCGA CCACAGTCTC GTCGCCGGGC ACGAGCCGGT TCACCCGGTG
GACGCCGACG GTCCAGCGTT CGCCCCGATG GTCGACATCG TCATGCGCCT GGGGCATCAG
TTGGGTCTCG GGGTTATCGC CGAGGGTGTG ACGACGCCAA CCGAGCTCGC CGAAGTGGTA
GCTGCGGGCT GCCACTTCGG CCAGGGCGCA CTCCTCGGCT GGGGGGTGCC GGCCGAGCAC
CTGGAGGCGA TGTTGGAGGC GGCCACCTCG TCGAAAGCCC CGCCGGTCGC CACGTCGGCA
CCGCCCGTGC TGGCCTCCGG TCCGCCGCCG CCCCGACGGC TGCCGTCTCT GCCCGTGCCC
GGGCAGCCGG TGTCGGAGTA G
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| Protein sequence | MAAVIGLVAV VAGVAVMVTA AGQPKPVPSV GWAEVVSLAA ATSGLLFGTG LLCLPGMAPT
VGAATRLSLD GLIIAVAVWF VGWVLVAEPT RLLGSAPVVG APILLATASA ALIVGLATVV
VFRVSSPRRR LGALAGGSAA TTVGGLGVAT GLFQADEGLA VGGAAVAVAG LLTVALVLRG
FDRPCESDID PTRREGEHAV LPILAMAVSA VYHHLQDGRF GPYGVAAFSV GGFALVARQY
LTLHDVRRYA RRLVEGEAHF RELAHTDALT GLANRRGLLR DLHRCAERGT GCVLFLLDLD
GFKNVNDVRG HDAGDAVLAE VGRRLRGPLR SGDVAARLGG DEFAVLLPGP PPTTDQVGER
LLAALGAAYE LPEGPVFLSA SIGIAGWAGQ PDVELLLRHA DLALRYAKQR GKNRFERYDV
AYDQLLSRRA TLEHELRGAI ERDELRLVFQ PVASLPSVRP VGAEALLRWR HPELGAVRPD
EFIPLAEECG MIAKLGAWVL DQACYQLSRW LADGHDVWVS VNVSPRELHA PAYVGQVTDA
LRVHRVPPQR LVLEVTEHAV ATDLDELIRR LTALRRTGVR IALDDFGAGY SSLGQLRRLP
LDILKIDHSL VAGHEPVHPV DADGPAFAPM VDIVMRLGHQ LGLGVIAEGV TTPTELAEVV
AAGCHFGQGA LLGWGVPAEH LEAMLEAATS SKAPPVATSA PPVLASGPPP PRRLPSLPVP
GQPVSE
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