| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1207 |
|---|
| Symbol | |
|---|
| ID | 5057657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1358866 |
|---|
| End bp | 1360488 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640473476 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001158055 |
|---|
| Protein GI | 145593758 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGC GGATCGAGGG GCACGGCGGG GCGCTCGCGC TTGCGGTGCT GCGGGCACAC
GGAGTGCGCG AGATGTTCAC CCTCTCCGGT GGGCACATCT TCCCGCTCTA CGACGCCGCA
CATCAGCTCG GGTTTCCGAT CTATGACGTC CGGCACGAGC AGTCGGCGGT CTTCGCGGCC
GAGGCGGTCG CAAAGCTACA GCGCCGCCCC GGCCTCGCCG TGCTGACCGC CGGACCGGGC
GTCACCAACG GCATCTCCGG GTTGACCAGC TCCTTCTTCA ACGCGTCACC GATTCTGGTG
CTCGGTGGGC GAGCGCCGCA GTTCCGGTGG GGGGCGGGCA GCCTCCAGGA GTTGGATCAC
CTGCCGTTGG TCACGCCGGT GACGAAGCAC GCCGAGACGG TGCTGCGCCC CGAGGAGATC
CCCCGCGCGG TGGGCGCCGC GTTGACCACG GCGCTCACCC CGCATCGTGG CCCGGTCTTT
GTGGATCTCC CACTGGAGGT GGCCTTCTCG GTGGCCGACG CCGACCTGCC CGCCGTTGCT
CCGATCGCCC CGATCGAGGC GGACCCGGCG GAGGTGGCGA AGGCCGCCGT CCTCATCGCT
CAGGGGCAGC GACCCGTGCT CATCGCCGGC TCCGACGTCT ACGCCGGCGA CGCCGTTGAC
GCCCTGCGCG CGGCGGCTGA GGCCCTTGCG GTGCCGGTCT TCACCAACGG CATGGGCCGG
GGCGCGCTGC CGCCGGAGCA CCCGCTTGCC TTTGCCAAGT CCCGCCGGGC GGCGTTGCGC
GACGCCGACG TGGTGGTGGT CGTTGGCACG CCGCTGGACT TCCGGCTCAA CTTTGGCGAC
TTCGGCGCCG CGGCGGTGGT GCACGTGGTG GATGCGCCGG GTCAGCGCGC CGGGCACCTC
CAACCGGCCG CCGCGCCCGC CGGTGACCTG CGACTGATCC TGTCCGCGTT CGCCGAGTAC
CCCGGCGAAC GCGTCGACCA CGCGGAGTGG GTCGCCGAGT TGCGGGCCGC CGAGGACGCT
GCCCGTACCC GCGACGCCGC GGAGATGGCC GCGGAGACCG ACCCGATCCG GCCCGCCCGC
GTCTACGGCG AGCTGCGCCG GGTACTGGCC CAGGACGCGA TCACCATCGG CGACGGTGGC
GACTTCGTCT CGTATGCGGG TCGGTTCCTG GAGCCCGCCC AGCCCGGCAC CTGGCTCGAC
CCCGGTCCGT ATGGCTGCCT CGGCACCGGG ATGGGCTACG CCATGGGCGC TCGGGTGACC
CACCCCGACC GACAGATCTG CGTTCTGATG GGGGACGGTG CGGCCGGCTT CTCCCTGCTG
GACGTGGAGT CGCTGGTCCG GCAGCGGTTG CCGGTGGTGA TCGTCGTCGG GAACAACGGC
ATCTGGGGGC TGGAGAAGCA TCCGATGCGG GCGCTGTACG GCTACGACGT GGCCGCTGAC
CTCCAGCCGG AGCTCCGTTA CGACCAGGTG GTCCAGGCGC TGGGCGGCGC TGGTGAGACG
GTGGCGAAGG CCGCCGACCT GGGGGCGGCG CTCCGGCGGG CCTTCGAGGC CGGGGTGCCG
TACCTGGTCA ACGTGGTGAC CGACCCGGCT GACGCGTACC CCCGGTCGTC GAATCTCGCC
TGA
|
|---|
| Protein sequence | MSERIEGHGG ALALAVLRAH GVREMFTLSG GHIFPLYDAA HQLGFPIYDV RHEQSAVFAA
EAVAKLQRRP GLAVLTAGPG VTNGISGLTS SFFNASPILV LGGRAPQFRW GAGSLQELDH
LPLVTPVTKH AETVLRPEEI PRAVGAALTT ALTPHRGPVF VDLPLEVAFS VADADLPAVA
PIAPIEADPA EVAKAAVLIA QGQRPVLIAG SDVYAGDAVD ALRAAAEALA VPVFTNGMGR
GALPPEHPLA FAKSRRAALR DADVVVVVGT PLDFRLNFGD FGAAAVVHVV DAPGQRAGHL
QPAAAPAGDL RLILSAFAEY PGERVDHAEW VAELRAAEDA ARTRDAAEMA AETDPIRPAR
VYGELRRVLA QDAITIGDGG DFVSYAGRFL EPAQPGTWLD PGPYGCLGTG MGYAMGARVT
HPDRQICVLM GDGAAGFSLL DVESLVRQRL PVVIVVGNNG IWGLEKHPMR ALYGYDVAAD
LQPELRYDQV VQALGGAGET VAKAADLGAA LRRAFEAGVP YLVNVVTDPA DAYPRSSNLA
|
|---|
| |