| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1116 |
|---|
| Symbol | |
|---|
| ID | 5057564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1261231 |
|---|
| End bp | 1261947 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473384 |
|---|
| Product | cobalamin (vitamin B12) biosynthesis CbiM protein |
|---|
| Protein accession | YP_001157965 |
|---|
| Protein GI | 145593668 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0310] ABC-type Co2+ transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00123] cobalamin biosynthesis protein CbiM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTACC TGGCGATGCA CATCTCCAAC GGGATCATCA ACGGTCCCGT CGCCGCGATC
TTCGCGGTGA TCGCGCTGGC AGCGATGGCG CTCTGCGTCC AGCGCGGCCG GCAACACCTG
GACGATCGAC TGGCGCCGAT GGCCGGCCTG GTCGCCGCCT TCATCTTCGC CGTGCAGATG
CTCAACTTTC CGATCTTCAC CGCCGGGGTC AGCGGCCACC TGCTCGGTGG CGCGCTCGCC
GCGCTGCTGG TGGGGCCGTG GGTCGGCGCA CTCTGCGTGG CCGTGGTGCT GATCGTGCAG
GCGCTGGTCT TCGGCGACGG CGGCGTGGCG ATGCTCGGTC TCAACATCAC CAACATGGCG
ATCGTCGGCA CCGCCGCCGC GTACCTGCTG ATCGTCGCAC TGCTGCGGGT CCTGCCGCGT
ACGCCGGCCG GGCTCGCCGT GACGGCGTTC GTCTCGGCCC TGGTCAGCGT CGTGGTGGCG
GCCCTGGGCT TCGTCTTCCA GTACCAGCTC GGTGGCGCCG CCGACCTCGG CGACAACATC
GCCGGTCTGG CCGGCACGAT CGCCGTCTCG CACCTGCTGA TCGGCATCGG CGAGGGCCTG
ATCACCGCGG TGACGGTGCT GACCGTCGCG AAGACCCGAC CCGATCTCGT CTACGCGCTG
CGCGCCCGCG GACCGGTCGC GTCAGCCCCC GTCCTGGCTG TTGGAGGTGC CCGGTGA
|
|---|
| Protein sequence | MEYLAMHISN GIINGPVAAI FAVIALAAMA LCVQRGRQHL DDRLAPMAGL VAAFIFAVQM
LNFPIFTAGV SGHLLGGALA ALLVGPWVGA LCVAVVLIVQ ALVFGDGGVA MLGLNITNMA
IVGTAAAYLL IVALLRVLPR TPAGLAVTAF VSALVSVVVA ALGFVFQYQL GGAADLGDNI
AGLAGTIAVS HLLIGIGEGL ITAVTVLTVA KTRPDLVYAL RARGPVASAP VLAVGGAR
|
|---|
| |