| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1054 |
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| Symbol | |
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| ID | 5057501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1194880 |
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| End bp | 1201740 |
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| Gene Length | 6861 bp |
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| Protein Length | 2286 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640473323 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001157905 |
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| Protein GI | 145593608 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region
[TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.740201 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTGAGTG CAGTAGGCAC GGATCGGAGT CGGGGTTTCG GCCGGCGGGT ACGGCGGTCG
GTGTGGTTGG CGGCTGGCCT GTCGGTGGTG ATGACACTGA CGATGTTGGG TGAGCAGCCG
GAGGCGGTGG CGGCGCCAAC GTGGGATATC CCCACTCCCC AGGAGGCGGT TGGGGTGAAG
ACACGTGCCG CCACGCCGAA GCCTGGCGGG TCCGATCATG CCGATTCCCG TGTGGTGTCC
GGGGCGACGG AGGTGGTGTG GCCGTCGGGG ACCGCGGTCG CGGATGTGGC TGCCGCGACC
GAGGCTGCTG GCATGGCGCG TGGCACGAGG GCGGGGCTGA CCGGTCCAGC TCGAGCCCGA
GCCGGCTCCC TTCCGGTCAC CGTGTCGTCG GGGTCGCTGG CGGATGACAT GTTGCCGCGC
AGAAGTGATG TTGCGGCGGT GACCGCGGTG AAGGTCAATG TGCATGATCG TGTGGCCACT
GCCAAGGCTG GTGTGGAGGG GTTGCTGGTG TCGGCTTCCC GCGCCGACGG GAAGCCCGGG
GTGGGGCGCG CGCGGGTTCA GGTGGACTAT GCGGGGTTCG CGCAGGCCTT TGGTGGCGGG
TGGGCGTCGC GGCTTCGTCT GGTTGAGCTG CCGGAGTGTG CCCTGAGTAC GCCGGAGGCC
GAGGAGTGTC GTACGCGTAC GCCTCTGGTG ACGGACAATG ACACCGCCAA CGGTGCGGTG
TCGGCGTCGG TGTCGGTCGG GGCGGAGTCG GCGGTGGTGT TCGCGGTCGA GGCTGAGGCG
TCGGGTGACA ACGGTGACTA CACCGCGACC AGTCTGTCGC CGGCTGGGCA GTGGCAGGTG
TCGGCGCAGA CCGGTGACTT CTCGTGGTCG TATCCGCTGC GGGTGCCGCC GTCGTTGGGT
GGTCCGGCTC CGGATGTTGG TTTCTCGTAC TCGTCGGGCA GTGTCGACGG GCGCACGGCG
TTGACCAACA ACCAGGGTTC GTGGATCGGG GACGGGTGGG ATTCCTGGCC GGGGTTCATC
GAGCGTAAGT ATCAGTCGTG TGCTGATGAC AATCCTGGGC ACAAGACCGG GGATCTGTGC
TGGTTCAACG ACAACGCGAC CCTGTCGTTG GGCGGCCATG CGGGGGAGTT GATCCGGGAC
GGGTCGGTGT GGCGGCTGCG TAACGATGAC GGCACCCGGG TGGAGCGGTT GACCAACTCG
GCGCGGGGCA ACGGGGACAA CGACAACGAG TACTGGAAGG TCACCACTCC TGACGGTATG
CAGTACTTCT TTGGCTACCA CAGGTTGCCG GGTTGGAGCA GTGGTAAGCC GGTCACGGAT
TCGACGTGGA CGGTGCCGGT GTTCGGGAAC GACTCCGGGG AGCCGTGCTA CAAGTCCTCG
TTTCCGGAGG CGTACTGCAC GCAGGCGTGG CGGTGGAACC TCGACTATGT CGTGGATCCG
AACTCGAACT CGATGGCGTA TTTCTATGGT ACGGAGACTG GTGCCTACGC CCGTGATCTT
GACCCTGATC AGCGCACCAC CTATGACCGC GGCGGGTATC TCAAGCGCAT CGAGTACGGC
ATGCGGGCCA ACGCCGAGTA CAGTCAGGCG GCGCCGTTGC GGGTTGTGTT CACCACCGCG
GAACGGTGCC TGACGGACTG TTGGAGCGGG GCGGCGTGGA CGTCGGATCC GGTGACCGAA
AACTGGCCGG ACACCCCGTG GGACCAGTAC TGCGACACCG GTCCGTGTAT GACGCAGGGC
GCGCCGACGT TTTGGACCGC GCATCGGTTG GCGAAGGTCA CCGCGCAGAC GCGTAGCGGT
ACCACCAGCT ACGCGAGTGT GGAGTCGTGG ACGCTGCGGC ACGAGTTCCT GAACGCGGGT
AACGGTGAGA CGGTGCCGAT GTGGCTACGG GGAATCACTC GTACCGGGCA TGTCACCACC
GCCGGCGGCG AGGTCGTGTC GGATCCGGAG ATCACGTTCG ACAGTGGGTC TGATCCGTTG
CCGAACCGGG TCGACGGCCC GGATGACGGG CGTACCGGGT TGTATCGGTG GCGGATCAAG
ACGGTGCACA CCGAGTCCGG TGGGGACGTC ATCGTCTCCT ACTCGGATGC GGACTGTACC
CGCACGACGC TGCCCAACCC GGCGACCAAC ACCACACGGT GCATGCCGTC GTACTACTCC
CCGGACGGGG ACGAACCGAC GTTGGACTGG TTCCACAAGT ATGTGGTGAC CCGGGTCGAC
CTTGACGACA CAGCCACGGA CCAGCCAACT GAAGTCACGA TGTACGACTA CGACACGCCG
GCGTGGGCGT ACAACACCGA CGAGTTGACC AAGGACAAGT ACCGCACCTG GAGTGACTGG
CGCGGCTACG GCAAGGTGAC CGTCCGGCAC GGTGCCACCG ACGGGCAGCA GACCGCGGTG
GAGTACCGCT ACCTACGCGG TCTCGACGGC GACAAGGCCA GCTCCGGCGT CAAGGACGTG
TGGGTCACCG ACTCGTGGGG CGGCAGGATC GAGGACCACG AGGCCCTGAA GGGCTTCGAG
TTGCAGACGA TCACGAAGAA CGGGCCGAGC GGTGCGGAGG TGTCCTCCAC CCGCAATGAC
CCGTGGATCA ACGGGCCGAC CGCGACCCGC AGCCGTGACG GGATCACTAC GAAGGCGTGG
ATGGTCAACA CCGACATCGC CCGCGCCCGT ACCGCCCTCG CCGCCGGTGG GCACCGCTAC
GTCAAGACCG TCACCAGTTT CAACAGCGAC GGCATGCCGG TCACGGTCGA GAACCACGGA
GACGAGGCCG TCGACGGTGA TGAGAGTTGT GCCCGCAGCA GCTACGCCCG GAACGACGCC
AGCTGGATGA TCGACCGGCT GTCGCAGGTC GAGACGTTGT CCCGGCTGTG TGCCGGTGCG
CCGACCCCCG CTGATCCGGC CACCGTTTTG AACCGGTCAC GGTCGTTCTA CGACGCCTAT
ACCGACGGCT CCTCACACGG CCAGGCACCC ACGAAGGGCA ACGTGGTTCG TACGGAGGAG
CTGGAGAGGT TCACCGGCAG CACGCCGGTG TATACCCGCA CCTCCACCAC GGCCTACGAC
GCCAACGGCC GGATCATCGC GGTCACCGAC CCGCGGGGGC ACACGACCAC CACGGCGCAC
AGCACCGCCA ATGGTGGCCA GGTCGTCCAG ACCGTGGTGA CCAACCCGAT GGGGCACACG
GGCACGACGC TGCTGACCCC GGCGTGGGCT GCCCCGACAA AGGTCACCGA CGCCAACGGC
GCGGTCACCG ACCTGACCTA CGATGGTCTC GGCCGGTTGA CCAACGTGTG GAAACCCGGC
CGGAACAAGG CCACCCAAAC ACCAAGCGTC AAGTTCGCCT ACCAGGTCCG CAACAGCGAC
GGCCCGACCG CGGTCACCAC CGAGGCGCTG CTGCCGACCG GGAGGACCTA TCGCACGTCG
GTGAACCTGT ATGACGGGTT CCTGCGGCTG CGACAGACCC AGCTCCAGGC CACCGGCGGT
GGACGCACGA TCACCGACAC GATGACCAAC AGCCTCGGCG CCACCGCGTG GACGTCCGCT
ACCTACTACG ACTCCACCAA CACCGAGGTG AACACAAGCC TGGCCACCCC GCAGGGCCAG
ATCCCCTCGA TCACCCGATA CACCTACGAC GGCGTCGGCC GGCCGACCGC GCAGATCCTG
ATCGGCGACG GGGTGGAGAA GTGGCGCACC ACCACCAGCT ACGGCGGTGA CCGCGTCCAC
ACCACCCCAC CGGCCGGTGG CACCGCCACC ACCACCGTCA CCCACGGTCT CACCAGCACG
CTGCGGCAGT ACAAGAACCC CGCCGACGTC GGCAGCGACG ACCCGACCAC GTTCGACACC
ACCACCTACA CCCACACCCG GCTCGGGCAG CTCGAGACGG TCACCGACGT CACCGGCGCC
AACACGTGGT CCTACACCTA CGACCTACGC GGCCGCCAAA CCCAGGCGAT CGACCCGGAC
AAGGGCACCA CCACCAGCAC CTACGACGCC GCCGGCAACA TCACCACCAG CACAGGCAGC
GGACGATCCC CCATCGCCTA CACCTACGAC GAACTCGGCC GCAACACCAG CGTCCGCGAC
GACACCACCA GCGGGAACAT CCGCGTCGAA TGGGAATACG ACACCCTGCC CAACGGCATC
GGCAAACTCA CCGCCGCTAC CCGATACACC AACGGTGACC CCTACACCAG CCGGGTCGAC
GCCTACGACG CCTACGGCCG ACCCACCTCC ACCTCGGTCG TGCTGCCCGA CACCCAGTCA
GAGCTGTGCG CCGCGGCCAG CCCGAACACC TGCACCTACA CCACCACCTA CACCTACCGG
CCCAACGGGC AGCCCTGGCG AATCGGCATG CCCGCCGCCG CCGACCTTCC GGCCGAGACC
CTGATCCTCG GCTACACCGA CGTCGGAAAC CCCGCCGGCT CTCTCTCTTC AGCCCAGATC
TACGCCAACA CCGTCATCTA CAACAAAATC GACCAACTCA CCCAGTACCA ACTCGGCCGT
TTCGGCCGCC GTGTCGCTGT CACCTCCTCC ATCGACGAAC CCACCCGCCG CCTCACCAGC
ACCAACGTCG TCCCCGAACT CAAACCCGAA GCCGCTAACC ACACCTACAC CTACGACGAC
GTCGGTAACG TCACCGAGAT CCACGACACC CCGACCGGCG GTACCGCCGA CCACCAGTGC
TTCACCTTCG ACCACCTCCG CCGCATGACC GAAGCCTGGA CCCCGGAATC CGGTGCCTGT
TCCACCACCC CCACCACCTG GAGCCAGATC GACGGGGCCA CCAACCCCTA CTGGCACACC
TGGACCCTCG ACGACGTCGG TAACCGCACC ACCGAAACCC GCCACGGCAC AGTCAACACC
ACCCACGCCT ACACCTACCC CAACCCCGGT GAACCCAGAC CACACGCCGT CACCACCGTC
ACCGCCAGCG GCGCCGACAC CGGAAACCGC ACCTACACCT ACGACGACGC CGGAAACACC
ACCACCCGAC CCACCGCCAC CGGTGACACC CAAACCCTGA CCTGGAACCG CGAAGGCAAA
CTCAGCACCA CCACCGACGA CACCGGCGAC ACCAGCTACA TCTACGGCGC CGACGGTAGC
CGACTCATCC GCACCGACCC GAGCGGCACA ACCCTCTACC TACCCGGCGG CACCGAAGTC
CGCCACACCA CCACCACCAG CACCACCACC GCCACCCGCT ACTACAGCTT CGCCGGCCGC
AGCATCGCCG TCCGCACCGC CAACACCCTC CACTGGATCG CCAGCGACCA CCACGGCACC
GCCGAACTCA CCATCGACGC CACCACCCTC ACCATCGCCA CCCGCCGCAC CCTGCCCTAC
GGCGAACAAC GCGCCACCAC CGGCACCTGG GCACCCACCA TGGACAAGGG CTTCCTCGGC
GGCACCCAGG ACCCCACCGG CCTCACCCAC CTCAACGCCC GCGAATACGA CCCCACCCTC
GGCCGCTTCA TCAGCGTCGA CCCCATCATG GACCTCACCG ACCCCCAACA ATGGAGCGCC
TACACCTACG CCAACAACAA CCCCGTCACC TACAGCGACC CCAGCGGCCT CGTCCACCTC
GAAGGCAGTG GCAAAAGCGA CGGGCGAATC GCCCACAAAT ACGGCGGCAA AACCAACATC
AGCGGCAAAG CGCCGAAGCT CTCCAAGCGG CCACCACCTG ATCGTTCCGG CTATGATGTA
ATCGCTGGAA ATGGGACCTA CCTGCTCACC AAGAACCCCT CCGGTGGGCT GGAACTGAAC
GGGGTCCCGG TTCCCGCCGG ACCAAGTGCA GAAGCTCTCG CGAATGAGAT TATCAGCTTT
TGCGAGGACC CTCGCGGCGG CGCTACACAT TGCCAACAAT CTCTTGACTG TACATACATG
TATGTCGAGG ATTGCGCAGA CAAGTGGGCG AACGGTGCTC TCGATGTCAT GCGAGGTGCC
CTCGGCGGTG AATTCGGCCA GTCGTACGAC GAAGCCCTCT ATGGCACTCT TAGGCAGGCT
ATACAGGAAG GTCTCGTTCG GTTTGGCTGG GATAGCGAGG GTAAGCTCGG CGGCGGCGGC
GGTTTCATGG GCAAACCCTA CCGAGCAGCC TGTGGCGGCA AGAGCTTTGC CGGCGACACA
GAGGTGCTAC TGGCAGATGG GGGCACCAAG CCGATCAAGG ACATCAAGGT CGGCGACCAG
GTATGGGCCA CCGATCCCGA AACTGGTGAT GAAGGCCCAC GCGAGGTAAC CCACCTCTGG
GTCCATGAGG ACCAACTAGT CGACCTTGAG GTTGACGGTG GTGACGTCAC GACAACTGAG
GACCACCCGT TCTGGAACGA AACTGACCAG CAGTGGCAGG ACGGCCAGGA TCTGGACCGT
GGTGACCTAC TCCACACCTC AACCGGCAAG ACGCTCGCCG TAGTTGGCCT CGACTGGGCC
ACCATCCAAC ACGGCACGGC CTACAACCTC ACCGTCGCCG ACATCCACAC GTACTATGTG
GTAGCGGGCG ATACGCCAGT ACTCGTCCAC AACACCAACA CTCCAATTGG ATGCGGTCCC
GGCGGCGCTC CAATTTACGA TATTCCGGCC GGTTCCAGTG GTGGTCCTGG GGCTGGGCAG
CGCATTCCGC CAAGAATGTT GGAAGATTAC AATATTGGCG TAAATGCTGA TCCAAGTTTG
CCAACGCCCC TATGCTCCTA CTGCCGAACT AATCCGGCCA CGAGCGTCGA TCACGTCGAA
CCGCGGGTCC ATGGTGGGGA CCTAACGGAC GCGAATACCA CGCCAGCATG TACCTTCTGT
AATAGTTCGA AGGGTGCTCG GGGGCAGCCT GTTAATCCTC CTCCGAACTA CACCGGCCCG
TTCCCTCCGC CTTGGTGGTA G
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| Protein sequence | MVSAVGTDRS RGFGRRVRRS VWLAAGLSVV MTLTMLGEQP EAVAAPTWDI PTPQEAVGVK
TRAATPKPGG SDHADSRVVS GATEVVWPSG TAVADVAAAT EAAGMARGTR AGLTGPARAR
AGSLPVTVSS GSLADDMLPR RSDVAAVTAV KVNVHDRVAT AKAGVEGLLV SASRADGKPG
VGRARVQVDY AGFAQAFGGG WASRLRLVEL PECALSTPEA EECRTRTPLV TDNDTANGAV
SASVSVGAES AVVFAVEAEA SGDNGDYTAT SLSPAGQWQV SAQTGDFSWS YPLRVPPSLG
GPAPDVGFSY SSGSVDGRTA LTNNQGSWIG DGWDSWPGFI ERKYQSCADD NPGHKTGDLC
WFNDNATLSL GGHAGELIRD GSVWRLRNDD GTRVERLTNS ARGNGDNDNE YWKVTTPDGM
QYFFGYHRLP GWSSGKPVTD STWTVPVFGN DSGEPCYKSS FPEAYCTQAW RWNLDYVVDP
NSNSMAYFYG TETGAYARDL DPDQRTTYDR GGYLKRIEYG MRANAEYSQA APLRVVFTTA
ERCLTDCWSG AAWTSDPVTE NWPDTPWDQY CDTGPCMTQG APTFWTAHRL AKVTAQTRSG
TTSYASVESW TLRHEFLNAG NGETVPMWLR GITRTGHVTT AGGEVVSDPE ITFDSGSDPL
PNRVDGPDDG RTGLYRWRIK TVHTESGGDV IVSYSDADCT RTTLPNPATN TTRCMPSYYS
PDGDEPTLDW FHKYVVTRVD LDDTATDQPT EVTMYDYDTP AWAYNTDELT KDKYRTWSDW
RGYGKVTVRH GATDGQQTAV EYRYLRGLDG DKASSGVKDV WVTDSWGGRI EDHEALKGFE
LQTITKNGPS GAEVSSTRND PWINGPTATR SRDGITTKAW MVNTDIARAR TALAAGGHRY
VKTVTSFNSD GMPVTVENHG DEAVDGDESC ARSSYARNDA SWMIDRLSQV ETLSRLCAGA
PTPADPATVL NRSRSFYDAY TDGSSHGQAP TKGNVVRTEE LERFTGSTPV YTRTSTTAYD
ANGRIIAVTD PRGHTTTTAH STANGGQVVQ TVVTNPMGHT GTTLLTPAWA APTKVTDANG
AVTDLTYDGL GRLTNVWKPG RNKATQTPSV KFAYQVRNSD GPTAVTTEAL LPTGRTYRTS
VNLYDGFLRL RQTQLQATGG GRTITDTMTN SLGATAWTSA TYYDSTNTEV NTSLATPQGQ
IPSITRYTYD GVGRPTAQIL IGDGVEKWRT TTSYGGDRVH TTPPAGGTAT TTVTHGLTST
LRQYKNPADV GSDDPTTFDT TTYTHTRLGQ LETVTDVTGA NTWSYTYDLR GRQTQAIDPD
KGTTTSTYDA AGNITTSTGS GRSPIAYTYD ELGRNTSVRD DTTSGNIRVE WEYDTLPNGI
GKLTAATRYT NGDPYTSRVD AYDAYGRPTS TSVVLPDTQS ELCAAASPNT CTYTTTYTYR
PNGQPWRIGM PAAADLPAET LILGYTDVGN PAGSLSSAQI YANTVIYNKI DQLTQYQLGR
FGRRVAVTSS IDEPTRRLTS TNVVPELKPE AANHTYTYDD VGNVTEIHDT PTGGTADHQC
FTFDHLRRMT EAWTPESGAC STTPTTWSQI DGATNPYWHT WTLDDVGNRT TETRHGTVNT
THAYTYPNPG EPRPHAVTTV TASGADTGNR TYTYDDAGNT TTRPTATGDT QTLTWNREGK
LSTTTDDTGD TSYIYGADGS RLIRTDPSGT TLYLPGGTEV RHTTTTSTTT ATRYYSFAGR
SIAVRTANTL HWIASDHHGT AELTIDATTL TIATRRTLPY GEQRATTGTW APTMDKGFLG
GTQDPTGLTH LNAREYDPTL GRFISVDPIM DLTDPQQWSA YTYANNNPVT YSDPSGLVHL
EGSGKSDGRI AHKYGGKTNI SGKAPKLSKR PPPDRSGYDV IAGNGTYLLT KNPSGGLELN
GVPVPAGPSA EALANEIISF CEDPRGGATH CQQSLDCTYM YVEDCADKWA NGALDVMRGA
LGGEFGQSYD EALYGTLRQA IQEGLVRFGW DSEGKLGGGG GFMGKPYRAA CGGKSFAGDT
EVLLADGGTK PIKDIKVGDQ VWATDPETGD EGPREVTHLW VHEDQLVDLE VDGGDVTTTE
DHPFWNETDQ QWQDGQDLDR GDLLHTSTGK TLAVVGLDWA TIQHGTAYNL TVADIHTYYV
VAGDTPVLVH NTNTPIGCGP GGAPIYDIPA GSSGGPGAGQ RIPPRMLEDY NIGVNADPSL
PTPLCSYCRT NPATSVDHVE PRVHGGDLTD ANTTPACTFC NSSKGARGQP VNPPPNYTGP
FPPPWW
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