| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1045 |
|---|
| Symbol | |
|---|
| ID | 5057492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1183642 |
|---|
| End bp | 1185072 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640473314 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001157896 |
|---|
| Protein GI | 145593599 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGC ACCACGAACA CGAACCAGAT AGGCCCGGTG GACGCCGAGC GAGGTCACGA
TGGTGGGCCG CTGGGCTGGC TGGGATGACC GGCCTGGCCC TGACCACTGT CGGCGTTGCC
GTCCTCCCGA CCACTGACGT GGTCGCACGC ACCCCCACCA GCGCCCGGCC TGAGACGCCG
ACGCCGGACC GGCCCTCCGC CGACGGTGAC CGCGGTCACC GCGATGACGG CGAACACCAC
GACAAAGCCA AGGACAAGAG CGCAGGCGAC AAAGGTAGAG ACAAGGAGAA GAAAGGGAGG
GAGAAGAAAT CGAAGGCCGT AGCCGTCCCG TGTGAGGCGG AGGCCCTGAT CGCCGCGATC
ACCCTCGCCA ACGCCCGCGG CGGAGCCGTC CTCGACCTCG CCCAGAAATG CACCTACCTG
CTCACCGCGA ACATCGACGG CGCCGGACTG CCCGCGATTA CCACCCCCAT CACGCTCAAC
GGCGGCAAAC ACACCACCAT CACACGTGCC GCCGCCGCCG ACCAGTTCAG AATCCTCACG
GTCAACGCCA ACGGTCGGCT TACCCTCAAC CATCTGAAGA TAACTGGCGG ATACGTTGAC
GCTATCGCCG GTGGCGGAAT TCTCATTAAC TCGGGTGGCG CCGCCACGAT CAACAGCAGT
AGCATTGTCC GTAATATCGC CAATGACGGT GGTGGCGGCG GGATCGCGAA CAATGGTGGC
ACCCTAGATA TCAAACACTC TACAATCAGC CAAAATGTCG CCGGTGTTGG CGGCGGGATC
CTAGGCGTTG GCACAGTTTC CATCGACAAG TCGCGGCTCG ATGCGAATAT CGCCGGATCT
GGCGGTGGCA TCATCCACGG TGGCAGTCTC CGAATTACCC GAAGTGAGAT AGTCAATCAT
CGCGCTGGAG AAGGTGGAGG TGTCTTCCTT CTTGGCGGCA CGACCGGTGG GATAACCGAT
ACGCGCATCG AGGGAAATAC GACAACAATC GGTGGTGGTG CCGCCATAGT CGGTGTACCC
CTACAGTTCA CCCTGTCAAG GGTCACCATC GCCAATAACT CCGCTACCGG CGGAGCGGGC
TTAGGTGCCC TATTCCTGGC GGCCGACTTC ATGTTGATTG AGGACAGCGT AATCAAGAAC
AACACCGGCA TCAACGGCGG CGGCATTCGC AACCTGGGCA CGTTGACGTT GCTGCGCACA
AAGGTCATTG GCAACCAGGC CACTGAGTCA GGTGGCGGAA TCTCCAACGG AGCCAACGGC
GTGCTAACCC TTTTCGGCAC CAAGGTTGTC AAGAATGTCG CCGTCGCGGA CGGTGGGGGT
ATCTTCAACG AGGCAGGTGG CGCAGTCGAG CTGAATATCG CCAGTGGCAC CTTTGTAGTC
AAGAACCAGC CGGACAACTG CTTCGGCGAC GTTCCCGGCT GCGCCGGATA G
|
|---|
| Protein sequence | MDQHHEHEPD RPGGRRARSR WWAAGLAGMT GLALTTVGVA VLPTTDVVAR TPTSARPETP
TPDRPSADGD RGHRDDGEHH DKAKDKSAGD KGRDKEKKGR EKKSKAVAVP CEAEALIAAI
TLANARGGAV LDLAQKCTYL LTANIDGAGL PAITTPITLN GGKHTTITRA AAADQFRILT
VNANGRLTLN HLKITGGYVD AIAGGGILIN SGGAATINSS SIVRNIANDG GGGGIANNGG
TLDIKHSTIS QNVAGVGGGI LGVGTVSIDK SRLDANIAGS GGGIIHGGSL RITRSEIVNH
RAGEGGGVFL LGGTTGGITD TRIEGNTTTI GGGAAIVGVP LQFTLSRVTI ANNSATGGAG
LGALFLAADF MLIEDSVIKN NTGINGGGIR NLGTLTLLRT KVIGNQATES GGGISNGANG
VLTLFGTKVV KNVAVADGGG IFNEAGGAVE LNIASGTFVV KNQPDNCFGD VPGCAG
|
|---|
| |