Gene Strop_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1000 
Symbol 
ID5057446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1119365 
End bp1119883 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content65% 
IMG OID640473270 
Producthypothetical protein 
Protein accessionYP_001157853 
Protein GI145593556 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACTG ACCGAGACAC CGACGACACC GACGAGATCG GTGGAGTTCA CGTCAGGTAC 
CTGCTGCACT GCCCTCGACA ACTGTGGCTC TACAGCCACG GCTACCGGCC GGAGGCCCGC
AACGAGGCCG TGGCCTTCGG CGAGAGCGTT GACGACACGA CATACCGCCG ACATGCCGGT
GTCGATCTTG GAGCGGCAAG GATCGACTGG GTCACCCGAG GGGCCATCGT CCACGAGACG
AAATCCTCTC GCGAGCCCTC GCCGCAACAC AATGCTCAAG TCCTGCACTA CTGCCTTTTG
CTCGCCCGAC GCGGGGTGAC CATTCGTGGC GGCGTCGTGC ACTATCCACT GATCCGACGA
GCTGTCAAGA TCAACTGGGA CGCTCGGGCG CGCCGCATCG CCGAGGAGAC CGAGGTGAAA
ACGCGTCAGG TCATCGCCAC CGACGCCCCC GCGCCACGGC TGCCCCGCGC GCAGTGCCGT
GGATGTTCCT ACCGCGACTA CTGTTGGGGA GACTCGTGA
 
Protein sequence
MTTDRDTDDT DEIGGVHVRY LLHCPRQLWL YSHGYRPEAR NEAVAFGESV DDTTYRRHAG 
VDLGAARIDW VTRGAIVHET KSSREPSPQH NAQVLHYCLL LARRGVTIRG GVVHYPLIRR
AVKINWDARA RRIAEETEVK TRQVIATDAP APRLPRAQCR GCSYRDYCWG DS