Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_0978 |
Symbol | |
ID | 5057422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 1097512 |
End bp | 1099140 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640473247 |
Product | delta-1-pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001157832 |
Protein GI | 145593535 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01236] delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.396659 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGCCG TCTTCTCTGT GCCCGAGCCC CGCAACGAGC CGGTACGCCC CTACGAGCCG GGGGGCACCG ACCGGGACCG GCTGCAACGG CGGCTGGTCG AGCTGGCCAA CGACCGGATC GACCTGTCGA TGACCATCGC GGGCGAGCAA CGGATGGCCG GCGGTGTCTC GATCGACGTG GTGCAGCCCC ACCGACACGC GCACGTGTTG GGCGTCACCG CCCACGCCAC CCACGATGAC GCTCGGGCAG CGGTGCAGGC CGCCAAGGAC GCGGCGCCCG GTTGGCGGGC GTTGCCGTTC GCGGAGCGGG CAGCGATCTT CCTGCGCGCC GCTGACCTGC TCGCTGGGCC CTGGCGAGAC ACGCTGAACG CCGCCACGAT GCTCGGCCAG TCGAAGACCG CATTCCAGGC GGAGATCGAT TCGGCCTGTG AGTTCATCGA CTTCCTTCGG TTCAACGTCC ACTTCGCTCG CCGGCTCCTC GCCGAGCAGC CACTCTCCTC GCCGGGCACC TGGAATCGGT TCGACCACCG TCCGCTCGAG GGCTTCGTCT ACGCGATCAC CCCGTTCAAC TTCACCGCGA TCGCCGGCAA CCTACCCTCG GCGCCGGCCC TGCTCGGCAA CACGGTGGTC TGGAAGCCGG CCCCCACCCA GCAGTTCGCC GCGCACTTCA CGATGCGGCT CTTCGAGGCG GCGGGCCTGC CCCCCGGTGT GATCAACATG GTCACCGGCC GAGGCGAGGA GGTGTCCGAC GTGGTGCTGG CCGACCCCGA CCTGGCCGGC ATCCACTTCA CCGGCTCCAC CAAGGTCTTT CAGCAGCTCT GGCGGACCGT CGGCGAGAAG ATCGCCCACT ACCGGAGCTA CCCGCGGCTG GTCGGCGAGA CCGGCGGCAA GGACTTCGTG GTCGCCCACC CCAGTGCTGA CGTGGACGCG CTGCACACCG CATTGATCCG GGGCGCGTAC GAGTTCCAGG GCCAGAAGTG CTCCGCGGCC TCCCGCGCGT ACATTCCGCG GTCACTGTGG GCGGGTGGGC TGCGTGACCG GCTCGCCGCC ACCGCGGAAG CGCTCACCTA CGGTGACGTC ACCGACTTCA GTAACTTCGG CGGCGCCGTC ATCGACGCCA AGGCGTACGC GCGGCACACC GCTGCCCTGG AGTTGATCTC CAGGGATGAC TGTTGCCGGG TTGTCGCCGG CGGCACCGCC GACGACACGG TTGGCTACTT CGTCCGGCCC ACGCTCTTCG AGTGCACCGA CGCCGCGCAC GAGACCTTCA CCACCGAGTA CTTCGGGCCG ATCCTCGGCG TGCACGTCTT CGACGACGCG CGTTTCGACG AGGCGGTCGC CCAGGCCGAA TCGATCGCGC CGTACGCGTT GACAGGCGCC ATTTTCGCAA CCGACCGGCA GGTGGTCGAC CGGGTCGCTG AGCGGATGCG GTACGCGGCC GGAAACTTCT ACATCAACGA CAAGCCAACC GGTGCGGTGG TTGGTCAGCA GCCATTCGGC GGTGCCCGCG CCAGTGGTAC CAACGACAAG GCCGGCTCCT GGCAGAACCT GGTCCGGTGG ATGTCCCCCC GCACGATCAA GGAGACCTTC GTCCCGCCGA CCGACCACAC CTATCCCCAC ATGCGCTAA
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Protein sequence | MDAVFSVPEP RNEPVRPYEP GGTDRDRLQR RLVELANDRI DLSMTIAGEQ RMAGGVSIDV VQPHRHAHVL GVTAHATHDD ARAAVQAAKD AAPGWRALPF AERAAIFLRA ADLLAGPWRD TLNAATMLGQ SKTAFQAEID SACEFIDFLR FNVHFARRLL AEQPLSSPGT WNRFDHRPLE GFVYAITPFN FTAIAGNLPS APALLGNTVV WKPAPTQQFA AHFTMRLFEA AGLPPGVINM VTGRGEEVSD VVLADPDLAG IHFTGSTKVF QQLWRTVGEK IAHYRSYPRL VGETGGKDFV VAHPSADVDA LHTALIRGAY EFQGQKCSAA SRAYIPRSLW AGGLRDRLAA TAEALTYGDV TDFSNFGGAV IDAKAYARHT AALELISRDD CCRVVAGGTA DDTVGYFVRP TLFECTDAAH ETFTTEYFGP ILGVHVFDDA RFDEAVAQAE SIAPYALTGA IFATDRQVVD RVAERMRYAA GNFYINDKPT GAVVGQQPFG GARASGTNDK AGSWQNLVRW MSPRTIKETF VPPTDHTYPH MR
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