| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0930 |
|---|
| Symbol | |
|---|
| ID | 5057374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1040535 |
|---|
| End bp | 1041716 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473200 |
|---|
| Product | phosphoribosylaminoimidazole carboxylase, ATPase subunit |
|---|
| Protein accession | YP_001157785 |
|---|
| Protein GI | 145593488 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0026] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) |
|---|
| TIGRFAM ID | [TIGR01161] phosphoribosylaminoimidazole carboxylase, PurK protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.170853 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCCC ACACCGGTCT GCCCGCTGTC GGAATGGTGG GCGGCGGCCA ACTGGCCCGG
ATGACCCATC AGGCCGCGAT CGCCCTCGGC CAGTCGTTAC GGGTGCTCGC GCTCGCTCCC
GATGATGGTG CCGCCCTGGT GGCCGCCGAC GTGCAGTACG GCGAACACGC CGATCTTGCG
GTGCTGCGTA CCTTCGCCAA AGGCTGCGAC GTGGTCACCT TCGATCACGA GCACGTTCCC
ACCGAGCACA TCGCGGCCCT CACCGACGAG GGCGTCACGC TGTTTCCGGC GGCCGAGGCG
CTGGTGCACG CCCAGGACAA ACGGGTTATG CGGGAACGTC TCGCGACGTT GGGTCTGCCG
AATCCGGCCT GGTGCCCGGT CGAGACCCCG GCCGACGTGG AAGCCTTTGG CGACGCTGTG
GGCTGGCCGG TGGTGCTCAA GGCGGCCCGG GGTGGCTATG ACGGCCGGGG CGTGTGGCTG
GTTGAGGACG CCGCTCGGGC GGCCGAACAA TCGGCCACGT TGCTGGCCGC CGGGATGCGC
CTGATCGCGG AGGAACGGGT GGCGCTGCGC CGGGAGCTGG CCGTGCAGGT GGCCCGTTCC
CCGTTCGGGC AGATCGCCGC GTACCCGGTG GTCGAGACCG TGCAGCGGGA CGGGATCTGC
GTCGAGGTCC TGGCCCCCGC GCCGGAGTTG CCGGAGGAAC TGGCGGTCGG TGCGCAGCAG
CTCGCCATCG ACCTCGCCAC CGAGCTCGGC GTGGTGGGTC TGCTCGCCGT CGAGCTGTTC
GAGGTGGCCG ACCCGGCCGA GGTGACAGGC AGCCGCCTCG TGGTCAACGA GTTGGCGATG
CGGCCGCACA ACTCCGGGCA CTGGACAATC GAGGGGGCCC GGACCTCCCA GTTCGAGCAG
CATCTGCGGG CGGTGCTCGA CTATCCGATG GGGGACACAT CGTTGACTGC GCCAGTGGTG
GTGATGGCCA ACGTGCTGGG CGGTGAGCCG GGCGGCATCT CCATCGACGA GCGCCTGCAC
CACCTCTTCG CCGCTGAGCC GGCTGCGAAG GTGCACCTGT ATGGCAAGCA GGTGCGGCCC
GGTCGCAAGA TCGGCCACGT CACCGTACTC GGCGACAACC TGGACGAGGT ACGTACCCGG
GCCGCGCGGG CGGCCCGTTG GCTGCGGGAG GGGCACGGAT GA
|
|---|
| Protein sequence | MDSHTGLPAV GMVGGGQLAR MTHQAAIALG QSLRVLALAP DDGAALVAAD VQYGEHADLA
VLRTFAKGCD VVTFDHEHVP TEHIAALTDE GVTLFPAAEA LVHAQDKRVM RERLATLGLP
NPAWCPVETP ADVEAFGDAV GWPVVLKAAR GGYDGRGVWL VEDAARAAEQ SATLLAAGMR
LIAEERVALR RELAVQVARS PFGQIAAYPV VETVQRDGIC VEVLAPAPEL PEELAVGAQQ
LAIDLATELG VVGLLAVELF EVADPAEVTG SRLVVNELAM RPHNSGHWTI EGARTSQFEQ
HLRAVLDYPM GDTSLTAPVV VMANVLGGEP GGISIDERLH HLFAAEPAAK VHLYGKQVRP
GRKIGHVTVL GDNLDEVRTR AARAARWLRE GHG
|
|---|
| |