| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0927 |
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| Symbol | |
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| ID | 5057371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1034296 |
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| End bp | 1036821 |
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| Gene Length | 2526 bp |
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| Protein Length | 841 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640473197 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001157782 |
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| Protein GI | 145593485 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.216017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCTCCG CTCCGAACGG CCCGTCGCGG GCCGGTCCCT CCGATCAGCC GAAGTGGGCC
CTCGTGCTCA CGGCGGCGGT GCTGGCGACG GCCCTGGTCG CAGCCGGGGT GGCGCTCATC
CTGCCGAGCG GTCTGCCCAG CGACGACCCG CTCGGTGGCC CCGCGCGCTT CGGGCTCGCG
GTCGCCGTCT TCGCCTTCGC GCAGCTCGCC CGGCTCCAGT TTCGGGCTGC GGCCGGAGCG
GTCAGCCTCA CCTGGGGTGA GGCCGCGCTC ATCATCTGCC TCCACCAGGT GCCCGCCCCC
TGGATTCCGG CGGCCACCCT CCTCGGCGTC GGCCTGGCCT GGTCGGGGAT GTCGCTGCTC
GGCACCCACC GACCACCGTT GGAAGTCGCC CGGATCGCGT CGTCGCTGAC CGTGGCGACG
GCGTTGGCTG GGTTCGTCAC CACCCTGCTG GGTCGGCCGC TGCTGGCGGC GCCGACCCCA
CCGCTCGCGC TCGCGATGGT CGCGGGTGCG GTCACCTACC TACTCGTCAG TGCCGGGCTC
GGTGCGGTCA CCCTCAACCT GTACCACCGT GTCCCCATCG GTGCCCTGCT GGGGGAGGCG
CTGGGCGGCA AACTGATGAC GTTCGTCGGG AACGTTGTGG TGGGCCTGGT CGTGGTTGCC
CTCATCGAGG TGGACCCACG TTGGTTGTTG ATCCTCCCGC TGCCGCTCTG GCTCCTCCAA
CAGACCTACC GCCACCGGCT CCGCGCCGAT CGGGAGCGAC GTGCCTGGCG TGCCTTCGCC
GAGGCGACCG CCGCGCTCAA TCACCACGAC GAGCGGGGAA TGGCGACGGC GGCGGTGAGC
GGCGCACTCA CCCTGTTCCA GGCCGAGTTG GTCACCGTGG AGGTCGCCGG CGGCGACGGC
CGACGGCATC GGTACCGGGG CGACGCCGCC GGTCAGCTCT TCACCTGGGA GAGCGGCGGC
CCCGACGTGA CCGACGGGGA CGAACGCGAT CTGGTTCGGC CACTCACCGT CGGGACCGCC
GAGGTCGGCC ACCTGCGTGT CCGGTTCCCC CGGGCGGCAC CGCCCACCGA CCGCGACCGC
GACGTCTTCG CGGCGTACGG TGACGCCCTC GCCGCCGCCC TGCACGACGC GGCGAGCCAT
CGGGAGCTGC GGAAGGTCGC CGCCTGCTCC TTGCAGGAGG CGGTGAGTGA CGCGCTGACC
GGCCTGGCCA ATCGGACGGC CATGCTCAGC AAGGGCGACC AGGTGCTGCG GCGGCTGGCG
CGGGACCGGC CGGTGGCCTT GCTGCTACTG GACATCAACC GGTTCAAGGA GGTCAACGAC
ACGCTTGGGC ATGCGGCCGG TGACCAGCTG CTCCGCCTGA CCGCCGACCG GCTGGGCGGG
TTGGCCCGCG GCGGGGACCT GCTGGGCCGG CTCGGCGGCG ACGAGTTCGC CCTCCTGTTG
ACATCGGTGC CAGTACTCGG AGACGGCGCC GCCCCGATGG CGTACACGCT GCGCCAGGCC
CGGGAGATCA CCGAACGGCT CGCCGCCCCC ACCGAGGTGG CGGGTGTCCG GATGTCCGTG
GAGGCCGCCG TCGGGGTGGT GGTCGCCGGC GCCGGCTCCG CCGACATGGC GGAGCTGCTG
CGGCGGGCGG ACATCGCGAT GTACCAGGCG AAGGAGGGTA GTGGCAGCGT CGCCGCGTAC
GACTCCGCGC GCGACGCCGC CAGCACCGAC CGGCTCGCTC TCCTGGCCGA GCTGCGCGAG
GCGTTGGCCG CCGACGACCA GTTGGTACTG GTCCTACAAC CGGCGGTGGA CCTGGCCACC
GGGGCACCGA CCGGGGTGGA GGCGCTGATC CGGTGGCGGC ATCCCCGACG TGGTTGGTTG
AACCCGCACG AGTTCATCCG TCCGGTGGAG AACAGCGAGC AGTTGGGCAC CTTCACCCGG
TACGTGCTGG ACAAGGCGCT CGGCGTGGCG GCGCAGTGGG CCCGGGACGG GCTGGACCTG
CCGATCTCGG TGAACCTCTC CGCCCGCAGC CTGCTCAACC CGCGGCTGCC AACCGAGATC
GCGGACGCGC TGCGTCGCCA CCGGGTGCCG GCGCGCCGCC TTGTCCTGGA GATCACCGAG
ACGGTGGTGA TGAGCGAGCT CGAGGTGATC GACGAGGTGC TCGGCGCGCT GCGCACGATG
GGCGTGCAGT TGGCCGTTGA CGACTTCGGC ACCGGGTTCT CGTCGTTGAC CTTCCTCACC
CGGGTCACCG TGGACGAGTT GAAGGTGGAC CGCTCCTTCG TGATCCGGAT GGCTGACTCG
CCGGAGGCGG CGGCGATCGT GCGCAGCACC GTGGGGCTTG GTCAGCAGCT GGGGCTACGG
GTGGTCGCCG AGGGGGTGGA GACTGCCGAG CAGCGCAGTG CGTTGGCCGA ACTCGGCTGC
ACGGCAGCCC AGGGCTACCA CTTCTTCAAA CCCATGCCGG CCGACAAGAT CGGGGCGGTC
CTTGGCGGTC TGGTCGACGA GGCGCGCCCC CGGATCATCC CGATCCGTGC CGACGGCGCC
TCCTGA
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| Protein sequence | MTSAPNGPSR AGPSDQPKWA LVLTAAVLAT ALVAAGVALI LPSGLPSDDP LGGPARFGLA
VAVFAFAQLA RLQFRAAAGA VSLTWGEAAL IICLHQVPAP WIPAATLLGV GLAWSGMSLL
GTHRPPLEVA RIASSLTVAT ALAGFVTTLL GRPLLAAPTP PLALAMVAGA VTYLLVSAGL
GAVTLNLYHR VPIGALLGEA LGGKLMTFVG NVVVGLVVVA LIEVDPRWLL ILPLPLWLLQ
QTYRHRLRAD RERRAWRAFA EATAALNHHD ERGMATAAVS GALTLFQAEL VTVEVAGGDG
RRHRYRGDAA GQLFTWESGG PDVTDGDERD LVRPLTVGTA EVGHLRVRFP RAAPPTDRDR
DVFAAYGDAL AAALHDAASH RELRKVAACS LQEAVSDALT GLANRTAMLS KGDQVLRRLA
RDRPVALLLL DINRFKEVND TLGHAAGDQL LRLTADRLGG LARGGDLLGR LGGDEFALLL
TSVPVLGDGA APMAYTLRQA REITERLAAP TEVAGVRMSV EAAVGVVVAG AGSADMAELL
RRADIAMYQA KEGSGSVAAY DSARDAASTD RLALLAELRE ALAADDQLVL VLQPAVDLAT
GAPTGVEALI RWRHPRRGWL NPHEFIRPVE NSEQLGTFTR YVLDKALGVA AQWARDGLDL
PISVNLSARS LLNPRLPTEI ADALRRHRVP ARRLVLEITE TVVMSELEVI DEVLGALRTM
GVQLAVDDFG TGFSSLTFLT RVTVDELKVD RSFVIRMADS PEAAAIVRST VGLGQQLGLR
VVAEGVETAE QRSALAELGC TAAQGYHFFK PMPADKIGAV LGGLVDEARP RIIPIRADGA
S
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