| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0801 |
|---|
| Symbol | |
|---|
| ID | 5057244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 888610 |
|---|
| End bp | 890241 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473070 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_001157656 |
|---|
| Protein GI | 145593359 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.235668 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCC ACCACCCCAC CCCGCTGACC TCCGAACATG ACTGGTGGCG CTCTGCCGCC
ATCTATCAGG TCTACCTCCG CAGCTTCGCC GACGCGAGCG GCGACGGGAT CGGCGACCTG
GCGGGCCTGC GGCAACGCCT GCCGTACCTG CGCGACCTCG GGGTGGACGC GCTCTGGTTG
ACCCCCTTCT ACCCCTCACC CATGATTGAC GGCGGCTACG ACGTCGCCGA CTACCGCGAC
GTCGACCCGA TGTTCGGCTC TCTCACCGAG TTCGACGAGG TGATCGTTGA CGCGCACGCA
CTGGGTCTAC GGGTCATCGT CGACCTGGTG CCGAATCACA CGTCAAGCGC CCACCCCTGG
TTCCAGGCCG CCCTCGCGGC CGCCCCCGGC TCCCCCGAGC GGGCGCGCTA CCTCTTCGCC
GCGGGGCGCG GAGCGGAGGG CGAGCTGCCG CCAAACGACT GGGAGAGCAT CTTCGGCGGG
CCGGCCTGGA CCCGACTGCC CGACGGGCAG TGGTACCTGC ACCTGTTCGA CTCGGCGCAG
CCGGACCTGA ACTGGCGTAA CCCCGAGGTC CGCGCCGAGT TCGAGGACGT GCTCCGGTTC
TGGTTGGACC GCGGTGTCGA CGGCTTCCGG ATCGACGTGG CGCACGGAAT GATCAAGGCG
GAGGGCCTGC CGGATGTCGG CTTCGGCCAG CAGACCGGCC AACGACAGGT CGAACTGCTC
GGCAAGAACC GGCTGCCCTA CTTCGACCAG GACGAGGTGC ACGACATCTA CCGCGCCTGG
CGGCCAATCC TGGACAGCTA CCCGGGCGGC CGGATGGCGG TGGCCGAGGC CTGGGCGGAG
ACCCCCCAAC GGCTCGCCCG CTACATCGGC CCAGACGAGT TGCACCAGGC GTTCAGCTTC
GACTTCCTCG ACGCCCAGTG GTCGGCCGAC TCCTTCCGCA AGGTCATCGA CAGCGCGCTC
GCCGAGTCGA CGGTCATCAA CGCGCCCACC ACCTGGGTGC TGTCAAACCA TGACAAGCAG
CGACACGTCA CCCGGTACGG CGACGGGCCA GCAGGGCTGC GCCGCGCCCG GGCCGCCGCC
CTGCTGATGC TCGCGCTGCC CGGCTGCGCC TACATCTACC AGGGTGAGGA ACTGGGCCTA
CCCGAGGTTC TCGACCTCCC CGACGAGCTG CGACAGGACC CGCAGTACCT GCGGACCGGC
GAGAGCCGGG ACGGCTGCCG GGTGCCGATC CCATGGAGCG GCGAGCTGGC CCCGTACGGC
TTCAGCCCGG CCGGCAGCAC GCTGAGCTGG CTGCCCGCCC CGACCACCTG GCGCGAGCTG
TCGGTGGCCG CCCAGACCGG TGTTCCCAGC TCCACGCTCG AGCTGTATCG CACCGCGCTG
CGGATCCGCC GAGCGAACCC GGCGCTCTCC ACCACCGCGG CCGAGATCGT CTGGCAGGAG
ACCCGTCCGG GCCTCCTCGC CTTCACCCGT ACCGCCGGCG GTACGGCGCT CACCTGTGTG
GTCAACATCA GCGACGAACC CGCCGTCATC ACCGAGTACG GCGAGCCGCT CGTCGCCAGC
GTAGCGCTCA CCCGGGAAGG CTCCGGCTAC CTGCTCCCGG TCGACGCGGC CGCCTGGTTC
GAACGGCGCT GA
|
|---|
| Protein sequence | MTVHHPTPLT SEHDWWRSAA IYQVYLRSFA DASGDGIGDL AGLRQRLPYL RDLGVDALWL
TPFYPSPMID GGYDVADYRD VDPMFGSLTE FDEVIVDAHA LGLRVIVDLV PNHTSSAHPW
FQAALAAAPG SPERARYLFA AGRGAEGELP PNDWESIFGG PAWTRLPDGQ WYLHLFDSAQ
PDLNWRNPEV RAEFEDVLRF WLDRGVDGFR IDVAHGMIKA EGLPDVGFGQ QTGQRQVELL
GKNRLPYFDQ DEVHDIYRAW RPILDSYPGG RMAVAEAWAE TPQRLARYIG PDELHQAFSF
DFLDAQWSAD SFRKVIDSAL AESTVINAPT TWVLSNHDKQ RHVTRYGDGP AGLRRARAAA
LLMLALPGCA YIYQGEELGL PEVLDLPDEL RQDPQYLRTG ESRDGCRVPI PWSGELAPYG
FSPAGSTLSW LPAPTTWREL SVAAQTGVPS STLELYRTAL RIRRANPALS TTAAEIVWQE
TRPGLLAFTR TAGGTALTCV VNISDEPAVI TEYGEPLVAS VALTREGSGY LLPVDAAAWF
ERR
|
|---|
| |