| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0733 |
|---|
| Symbol | |
|---|
| ID | 5057174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 815570 |
|---|
| End bp | 816193 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640473000 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001157588 |
|---|
| Protein GI | 145593291 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.329217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGTG AGCAGTTTGA GGTCGGGGTT GGTCCGTGGC AGGGCACCCC GCCAGACGAC
CCGCGCTATG ACCCAGACCT GCTTGCGCAC GGTGACCGAC GCAACGTCGT TGACCGGTAC
CGCTACTGGC GGCAGGAGGC CGTCGTCGCG GACCTGGACC AGCGGCGGCA CGACTTTCAC
GTCGCGATCG AGAACTGGCA GCACGATCTG AACATCGGGA CCGTGGTTCG TAACGCCAAC
GCGTTCCTCG CCGCCGAGGT CCATATTGTC GGCCGCCGCC GATGGAATCG ACGCGGCGCC
ATGGTGACCG ACCGCTACCA GCATGTACGG CATCACGAGA CGATCGAAGG CTTCGTCGCC
TGGGCGGCGG GTGCCGGGCT TTCGGTGGTC GGCATCGACA ATCTGCCCGG CTGTCGACCG
CTGGAGACGG CCGCGCTGCC CCGGCAGTGC GTGTTGCTCT TCGGTCAGGA GGGCCCGGGT
CTGTCCGACC CCGCTCGGGC CGCCTGCGAC CAGCTCTTCT CGATTGCCCA GTACGGTTCG
ACCCGTTCGA TCAACGCCGG CGTGGCCAGC GGCATCGCCA TGCACGCCTG GATCCGGTCG
TACGGCGGGC CAGCGCCGGC CTGA
|
|---|
| Protein sequence | MTGEQFEVGV GPWQGTPPDD PRYDPDLLAH GDRRNVVDRY RYWRQEAVVA DLDQRRHDFH
VAIENWQHDL NIGTVVRNAN AFLAAEVHIV GRRRWNRRGA MVTDRYQHVR HHETIEGFVA
WAAGAGLSVV GIDNLPGCRP LETAALPRQC VLLFGQEGPG LSDPARAACD QLFSIAQYGS
TRSINAGVAS GIAMHAWIRS YGGPAPA
|
|---|
| |