Gene Strop_0376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_0376 
Symbol 
ID5056814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp432662 
End bp434800 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content72% 
IMG OID640472648 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_001157239 
Protein GI145592942 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCAGG ATCGAACGGC GGTACGCGAG CAGGCTGAGA CGGTGCTGCG CCGGCTGGCC 
GGAGAGCACG CCCGGCTCCG CGACGACCAG TGGCGGGCGA TCGAGGCGCT GGTGGTCGAC
CGACGGCGGG TACTCTGCGT CCAGCGCACC GGTTGGGGTA AGTCAGCGGT CTACTTCGTG
GCCACCGCGC TGCTGCGGGC GCTCGGCACG CAGGGACCGA CGGTGATCGT CTCCCCGTTG
TTGGCGTTGA TGCGCAACCA GGTCGAGGCG GCCGCCCGGG CCGGGATCCG GGCCCGGACC
ATCAACTCCG CGAACCTTGA CGAGTGGGAC GAGGTCACCG GGGAGATCCA CGCCGGGGCG
GTGGACGTGC TCCTGATCAG CCCAGAACGG CTCAACAACC CGGACTTTCG GGACACCGTT
CTACCGAAGC TGGCCGCCAC CACCGGGCTG CTCGTGGTGG ATGAGGCGCA CTGCGTATCC
GACTGGGGGC ACGACTTCCG CCCCGACTAT CGCCGGCTGC GGACGTTCCT CGGCAACCTG
TCGGCCGGCA CGCCGGTGCT CGCCACCACG GCCACCGCCA ACGCCCGGGT CACCCAGGAT
GTCGCCGAAC AACTCGGCGC GGCGTCCCGG CTCGGGGCGG GGCCCGAGGC CCTGGTGCTG
CGAGGCAGCC TGGACCGGGA GTCCTTGCGG CTCGGCGTGG TCGACCTGCC CGGCCCGGCG
TACCGGCTGG CCTGGCTCGC CGACCATCTG GACGAACTCC CCGGCTCCGG CATCATCTAC
ACGTTGACGG TGGCTGCGGC GGCGGAAATC ACCGAGTTCC TCCGGTCCCG GGGCTACACC
GTGGCCTCGT ACACCGGCCA GGCCGACGAT GCGGACCGTC GCGCCGCCGA GCAGGATCTC
CTCGACAACA AGATCAAAGC ACTGGTGGCC ACGAGCGCGC TCGGGATGGG GTTCGACAAG
CCCGACCTCG GGTTCGTGGT TCATCTCGGC GCGCCACCGT CGCCCATCGC GTACTACCAG
CAGGTCGGCC GCGCCGGCCG GGCCGTCGCC CACGCCGAGG TGCTGCTGTT GCCCGGGGGT
GCCGAGGACG CCGCGATCTG GCGATACTTC GCCGCACTGG CCTTCCCACC GGAGGATCAG
GTGCGGTCGG TGCTGGCCGC TCTGCACACC GACCGTCCCC TCTCCACACC GGCGCTCGAG
CCGATCGTGG ACCTGCGCCG TACCCGGTTG GAGCTGATGC TCAAGGTTCT GGACGTCGAC
GGGGCGGTCC GTCGGGTACG CGGTGGCTGG ATCTCCACGG GTGAACCCTG GATCTATGAC
GAGGCGCGGT TGCGACGGGT CGCGGCGGCC CGTACCGCCG AACAGGCGGC GATGCGGGAG
TACGCGACCA CCTCCGCCTG CCGCCTCCGC TACCTACGGG AGTGCCTGGA CGATGCGGGG
GCAACCGACT GCGGCCGGTG TGACCGGTGT GCTGCGCCGA CCTTCACCGA GGAGCTGTCC
GATGGCGCCC TGCGAGCGGC CGAAGCATTC CTCGGCCGCT CCGGTGTCGG GATTTCCCCG
AAAAAGCTCT GGCCGACCGG CCTTGCCGCG GTGGGTGTTC CACTCAAGGG GCGGATCGCC
CTCCCGGAGC AGGCGCTGCC CGGTCGGGCC GTCGGGCGCC TCTCCGACCT CGGCTGGGGC
GGGCGGCTGC GGGAACTCGT CGGGCCGGAC ACCGCCGACG TGGACGCGCC CGACGATGTG
GTTGCCGCCG TGGTGGAGGT GCTCCGGGAG TGGGCGCACG GCACCGACCC CTGGCCGCGT
CGCCCTGTCG GGGTGGTCGC GGTCGGCTCC CGCCACACCC GGCTGGTCGC CTCGCTCGCC
GGGCGGATCG CCGCGGTGGG GCGGATGCCG CTGCTCGGCA CTGTCATGGT GTCCGCCGCG
GGCGGGCCAC GCGGCAACAG CGCCCAACGG GTACGGGCCC TACACGGCTC GGTGGCCCTG
CCGTCGGAGC TGGTCGGGGC CCTGGCCGGC CTGAGCGGGC CGGTACTGCT CGTTGACAAC
CTCGTCGATT CGGGGTGGAC CATGACGATG GTGACACGGG AACTGCGTCG GGCGGGAGCG
CCGGAGGTGC TTCCGCTCGC CCTGGCGGTC GCCGGTTGA
 
Protein sequence
MGQDRTAVRE QAETVLRRLA GEHARLRDDQ WRAIEALVVD RRRVLCVQRT GWGKSAVYFV 
ATALLRALGT QGPTVIVSPL LALMRNQVEA AARAGIRART INSANLDEWD EVTGEIHAGA
VDVLLISPER LNNPDFRDTV LPKLAATTGL LVVDEAHCVS DWGHDFRPDY RRLRTFLGNL
SAGTPVLATT ATANARVTQD VAEQLGAASR LGAGPEALVL RGSLDRESLR LGVVDLPGPA
YRLAWLADHL DELPGSGIIY TLTVAAAAEI TEFLRSRGYT VASYTGQADD ADRRAAEQDL
LDNKIKALVA TSALGMGFDK PDLGFVVHLG APPSPIAYYQ QVGRAGRAVA HAEVLLLPGG
AEDAAIWRYF AALAFPPEDQ VRSVLAALHT DRPLSTPALE PIVDLRRTRL ELMLKVLDVD
GAVRRVRGGW ISTGEPWIYD EARLRRVAAA RTAEQAAMRE YATTSACRLR YLRECLDDAG
ATDCGRCDRC AAPTFTEELS DGALRAAEAF LGRSGVGISP KKLWPTGLAA VGVPLKGRIA
LPEQALPGRA VGRLSDLGWG GRLRELVGPD TADVDAPDDV VAAVVEVLRE WAHGTDPWPR
RPVGVVAVGS RHTRLVASLA GRIAAVGRMP LLGTVMVSAA GGPRGNSAQR VRALHGSVAL
PSELVGALAG LSGPVLLVDN LVDSGWTMTM VTRELRRAGA PEVLPLALAV AG