| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0350 |
|---|
| Symbol | |
|---|
| ID | 5056788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 401222 |
|---|
| End bp | 402157 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640472622 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001157213 |
|---|
| Protein GI | 145592916 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02952] RNA polymerase sigma-70 factor, TIGR02952 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCT TCGGCTACGC GCAGCGGCCG ATCGGCCTGG GCGACCCGCC TCCCCGATCC
ACGACGAATG AACGGTTGAC ACCCCGCGGG CCCCGGGATG ACGGCCGGCT CGCCGCCCGG
AGCGACAACG GGCTACGCAG CCGTCCACAT CCCAACGAGG CCCCGGCCCG GAGCGGAACA
CCGGGCGCGA ACGCCAAGCC GGTCGGAGCC CGGGTCGCCT CGCCAGCCCG GCCCGCTATG
CCCGTACAGG GCCGCCGGAG CGCCGACCCA CCCGCCACCG CCGACTCCGC CGCCACCGAC
ACGGCGGTAC TGCCCGCGTT GCCGGCGAGC ACACCCGCCA CCGGCTTCCC GAGCCGTCCC
GACCCGTCCG ACCCGGCAAC CGAGATCTGG GCGTTGGTCG AGCGAGCGCA GGCCGGGGAG
GCCGAGGCCT TCGGCCTGAT CTACGACCGG TACGTGGACA CCGTCTTCCG GTTCGTCTAC
TTCCGAGTGG GCAACCGCCA ACTGGCAGAG GACCTCACCT CCGACACCTT CCTCCGAGCG
CTGAAGCGAA TCGGTAGCTT CACCTGGCAG GGCCGGGACC TCGGGGCCTG GCTGGTGACG
ATCGCCCGCA ACCTGGTCGC GGACCACTTC AAATCCGGCC GCTACCGGCT CGAGGTAACC
ACTGGCGACG TCCTCGACGC CGAACGCGAA GACCGGGGGC CGGAAGGCAG CCCGGAGGCG
GCCGTGGTCG AGCACATCAC CAATGTCACC CTGCTCGGTG CGGTCAAACA GCTCAACCCG
GAGCAGCAGG AGTGCATCGT GCTCCGCTTC CTCCAAGGCT TCTCGGTGGC GGAGACGGCG
CGGGCCATGG GCAAGAACGA GGGCGCGATC AAGGCCTTGC AGTACCGGGC GGTGCGGGCC
CTCGCCCGGC TGCTCCCGGA CGGCTTCCGG ACATAA
|
|---|
| Protein sequence | MTTFGYAQRP IGLGDPPPRS TTNERLTPRG PRDDGRLAAR SDNGLRSRPH PNEAPARSGT
PGANAKPVGA RVASPARPAM PVQGRRSADP PATADSAATD TAVLPALPAS TPATGFPSRP
DPSDPATEIW ALVERAQAGE AEAFGLIYDR YVDTVFRFVY FRVGNRQLAE DLTSDTFLRA
LKRIGSFTWQ GRDLGAWLVT IARNLVADHF KSGRYRLEVT TGDVLDAERE DRGPEGSPEA
AVVEHITNVT LLGAVKQLNP EQQECIVLRF LQGFSVAETA RAMGKNEGAI KALQYRAVRA
LARLLPDGFR T
|
|---|
| |