| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0276 |
|---|
| Symbol | |
|---|
| ID | 5056714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 317984 |
|---|
| End bp | 319492 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640472548 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001157139 |
|---|
| Protein GI | 145592842 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2339] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0292908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGCCGG CCGGGCAGGC CGGTGGTGAC TACGCTGACG GCATGGCCGA GACCCCGCCC
GGCGCGCCCC CGCCGTCGCC GACCACCGCC GTACCGGCGG CCGCTCCGCA GATGCCGTCC
CGTCGTCGAA ACTGGCGTCG CTTCCTCGTT CTCGCCGGGG TGATTCTGCT GATCGCGGCC
TGCGCCGTGT TCATGCTCTG GACACTGGGC GAGAGCCTCG GCGCGGAGGC GCTGCTGATT
GGTGTGTTCG CGGCGGTTCT TCCGGTCCCG GTGCTGGTCG CCTGCTTCCT CTGGCTTGAT
CGGTACGAGC CGGAGCCGCT GCGGTACCTG GTCTTCTGCT TCGCCTGGGG TGCGTTCGTG
GCCACTGCGG TGTCGCTGAC GGTCAACACC TTCGCCGCGA ACCGGTTCGA GGCGGCGGGT
CTGCCGACCG CGCTCACGGC GGTCTTGGTC GCGCCCTTCA TCGAGGAGCT GACCAAGGCG
CTGGGGCCGA TCCTGCTGCT GATCTTCCGG CGTCGGGAGA TCTCCGGAAT CACCGACGCC
CTGGTCTACT GTGGGCTCTC CGCGATCGGT TTCGCGATGG TGGAGAACAT CCTCTACCTC
GGCGGGATCG GATATCGGAC GGGTGTGGAG GAGTACGGCC CGGCGACCGG CACGCAGCAG
GTCATCGCGA TCTTTATCTT CCGGATCCTG CTCTTCGGGT TCGCCCACCC GCTGTTCACC
TCCATGACCG CGGTGGGGCT GGGAATCGCC GCCCGTAGCG CCGATCGGCG GGTACGGGTG
CTGGCACCCG CGGCCGGCCT GCTGCTGGCG ATGATGCTGC ACGGTGCCTG GAACCTGCTG
CCGACGTTGA CCCAGGCCAC CGGGCAGCTG TTGATTCAGC TCTACGGCCT CATTGGCGTC
ATGGTGCCGA TCTTCTTCGG CATGGTTGCG CTGGCGGTTT GGTTGCGATC CTGGGAAGGG
CGACTCACCG AGCGGACCCT GCCCGACTAC GTCCGTTCCG GTTGGCTCAC CCCGCCGGAG
GTGGCGGCGT TGAGCAGTCT CGGACGGCGG CACGCCGCCC GGGTGTGGGC CAAGCGGGTC
GGCGGCGACC AGGGGCGGAA GGCGATGCGC GGTTACCAGT TCGCGGCCAC CCGGCTCGCG
TTGCTGCGCG ACGGGATGCG CCGTGGGCTG GACGATCGCC CGGCGGAGCG GGAGCGGGCC
GTGGCCGAGG AGCGGTACCT GCTGGAACTG ATGAGCGGCT ACCGAGCGTT CTTCGTTGGC
CGGGATCCGC GCGCCCCGGC TGGCGTATGG GACGGGCACC GCTACCACCT GCGGTTCCCG
GATGGGTCGC AGCGCGCGGT AGCGGCGCCG GAGGAGCCGG TGGTACCGAT TCCGGTCGTG
CTGGCGCCGC CTTCGCCGCC CGCGTTCCCG CCCGGTTATC CGCCACCGCC CGGTTATCCG
CCGCCGCCTG GTCATCCGCC GCCCGGCTGG TACGGGCCGC CCACCTCCGG GCGCCCCGGC
CAGTTCTGA
|
|---|
| Protein sequence | MWPAGQAGGD YADGMAETPP GAPPPSPTTA VPAAAPQMPS RRRNWRRFLV LAGVILLIAA
CAVFMLWTLG ESLGAEALLI GVFAAVLPVP VLVACFLWLD RYEPEPLRYL VFCFAWGAFV
ATAVSLTVNT FAANRFEAAG LPTALTAVLV APFIEELTKA LGPILLLIFR RREISGITDA
LVYCGLSAIG FAMVENILYL GGIGYRTGVE EYGPATGTQQ VIAIFIFRIL LFGFAHPLFT
SMTAVGLGIA ARSADRRVRV LAPAAGLLLA MMLHGAWNLL PTLTQATGQL LIQLYGLIGV
MVPIFFGMVA LAVWLRSWEG RLTERTLPDY VRSGWLTPPE VAALSSLGRR HAARVWAKRV
GGDQGRKAMR GYQFAATRLA LLRDGMRRGL DDRPAERERA VAEERYLLEL MSGYRAFFVG
RDPRAPAGVW DGHRYHLRFP DGSQRAVAAP EEPVVPIPVV LAPPSPPAFP PGYPPPPGYP
PPPGHPPPGW YGPPTSGRPG QF
|
|---|
| |