| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0269 |
|---|
| Symbol | groEL |
|---|
| ID | 5056707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 306170 |
|---|
| End bp | 307792 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640472541 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001157132 |
|---|
| Protein GI | 145592835 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00058444 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA TGATCGCGTT CGACGAGGAA GCTCGCCGCG GCCTCGAGCG GGGCATGAAC
CAGCTCGCTG ACGCCGTGAA GGTGACCCTC GGCCCCAAGG GCCGCAACGT CGTGCTCGAG
AAGAAGTGGG GCGCTCCCAC CATCACCAAC GATGGTGTGA GCATCGCCAA GGAGATCGAG
CTCGAGGACC CGTACGAGAA GATCGGCGCT GAGCTGGTCA AGGAGGTCGC CAAGAAGACC
GACGACGTCG CCGGTGACGG CACGACGACG GCGACCGTCC TGGCCCAGGC CATGGTCCGT
GAGGGCCTGC GTAACGTGGC CGCCGGCGCC AACCCGATGG CCCTGAAGCG GGGCATCGAG
ACCGCGGTCG CCAGCGTCTC GGAGGAGCTG CTGAAGCTCG CCAAGGACGT CGAGACCAAG
GAGCAGATCG CCTCCACCGC CTCCATCTCC GCCGGAGACC CGAGCGTCGG CGAGATCATC
GCCGAGGCGA TGGACAAGGT CGGCAAGGAA GGCGTCATCA CCGTCGAGGA GAGCAACACC
TTCGGCCTGG AGCTTGAGCT CACCGAGGGT ATGCGCTTCG ACAAGGGCTA CATCTCCGCG
TACTTCATGA CCGACCCGGA GCGGATGGAG GCCGTCTTTG ACGACCCCTA CATCCTGATC
GTCAACAGCA AGATCTCCTC GGTCAAGGAC CTGCTCCCGA TCCTGGAGAA GATCATGCAG
TCGGGCAAGC CGCTGCTGAT CATCGCCGAG GACATCGAGG GCGAGGCGCT GGCGACCCTG
GTCGTCAACA AGGTGCGGGG CACCTTCAAG TCCGTCGCCG TCAAGGCTCC GGGCTTCGGT
GACCGCCGCA AGGCCATGCT CGGTGACATC GCCATCCTCA CCGGTGGTCA GGTCATCAGC
GAGGAGGTCG GCCTCAAGCT GGACGCCGTC AGCCTCGACA TGGTGGGCCG TGCCCGCAAG
GTCGTGGTGA CCAAGGACGA GACCACGATC GTTGACGGTG CCGGTGACGC CGAGCAGATC
CAGGGCCGGG TCAACCAGAT CCGGGCCGAG ATCGACAAGA GCGACTCCGA CTACGACCGG
GAGAAGCTGC AGGAGCGGCT GGCCAAGCTG GCCGGTGGCG TTGCGGTGAT CAAGGTCGGC
GCGGCCACCG AGGTCGAGCT TAAGGAGCGC AAGCACCGCA TCGAGGACGC CGTCCGCAAC
GCGAAGGCGG CCGTCGAGGA GGGCATCGTC CCGGGTGGTG GCGTCGCGCT GGTTCAGGCC
GGCAAGACCG CCTTCGACAA GCTCGACCTG ACCGGTGACG AGGCGACCGG CGCCCAGATC
GTCAAGATCG CGCTGGACGG CCCGCTGCGG CAGATCGCCG TCAACGCCGG CCTTGAGGGT
GGCGTGGTCG TCGAGCACGT CCGTGGCATC GAGGCCGGTC ACGGCCTGAA CGCCGCGACC
GGTGGCTACG TGGACCTGAT GGCCGCGGGC ATCATCGACC CGGCCAAGGT GACCCGTTCG
GCGCTGCAGA ACGCATCGTC GATCGCGGCG CTCTTCCTCA CCACCGAGGC CGTCGTGGCG
GACAAGCCGG AGAAGACCCC GGCTGCCCCG GCTGGCCCGG GCGGCGGGGA AATGGACTTC
TGA
|
|---|
| Protein sequence | MAKMIAFDEE ARRGLERGMN QLADAVKVTL GPKGRNVVLE KKWGAPTITN DGVSIAKEIE
LEDPYEKIGA ELVKEVAKKT DDVAGDGTTT ATVLAQAMVR EGLRNVAAGA NPMALKRGIE
TAVASVSEEL LKLAKDVETK EQIASTASIS AGDPSVGEII AEAMDKVGKE GVITVEESNT
FGLELELTEG MRFDKGYISA YFMTDPERME AVFDDPYILI VNSKISSVKD LLPILEKIMQ
SGKPLLIIAE DIEGEALATL VVNKVRGTFK SVAVKAPGFG DRRKAMLGDI AILTGGQVIS
EEVGLKLDAV SLDMVGRARK VVVTKDETTI VDGAGDAEQI QGRVNQIRAE IDKSDSDYDR
EKLQERLAKL AGGVAVIKVG AATEVELKER KHRIEDAVRN AKAAVEEGIV PGGGVALVQA
GKTAFDKLDL TGDEATGAQI VKIALDGPLR QIAVNAGLEG GVVVEHVRGI EAGHGLNAAT
GGYVDLMAAG IIDPAKVTRS ALQNASSIAA LFLTTEAVVA DKPEKTPAAP AGPGGGEMDF
|
|---|
| |