Gene Strop_0256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_0256 
Symbol 
ID5056694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp290727 
End bp293573 
Gene Length2847 bp 
Protein Length948 aa 
Translation table11 
GC content74% 
IMG OID640472528 
ProductABC transporter related 
Protein accessionYP_001157119 
Protein GI145592822 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0574193 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATCGC CGTCACCGGC CGCGTGGGTC CGGCGTGTCC TGCCCACCCG TCGGCGTGCG 
CTGGCCGCGG CGGTGGTCGT CGTCCTGCTC GCCGCCGGAG TAGTAGCCGG AACCCTCCGA
CCCTCCGAGC CGGACCTGCG CACCGAGGCG GCGCTGGTCA CGGTCCGGTC CGGGCCAACC
GGTGACGAGC CGGTCGAGTT GGACACCACG CTGTACCTGC CCCCCGCCGC GACCGCCGAC
GCCCCGGTGC CGGCGGTGCT GCTCGGGCAC GGCTTCGGCG GTACCAAGGA GTCGGTCCGC
GCCGACGCCG AGGAGTTTGC CGACCGGGGG TACGCGGTGC TGACCTGGAC CGCGCGGGGC
TTCGGCCGCA GCGGCGGGCA GATCCACCTG GACCATCCGG ACTATGAGGT CCGCGACGCG
CAGCGCCTGC TGGACTGGCT GGCCGCCCGC CCGGAGGTCG TCACCGACGC CGCCGGTGAC
CCGCGAGTGG GGGTGGTCGG CGGCTCCTAC GGCGGTGCGC TGGCGCTCCT GCTCGCCGCG
CAGGACCAGC GGGTCGATGC GATCGTGCCG ATGATCACCT GGAACGACCT GGCCCGCTCC
TTCCTGCCGG AGAACAGCGG CGAGGGGCCG GAGCAGGGAG TGTTCAAGAA GGGGTGGGCG
GGGCTCTTCT TCGGCAGCGG CGGCAACGCC GGCCCCGCCT CGGTCGGTGG CTCCGGCCCG
GCCGGCGGCC TTGCCCCCGG TGGCGGTTCC GTCCCGGGCG GCTCCCTCCC GGAGAACGCG
GCCACCGCGG CCGGCGCCAT TGACCCCTCC TGCGGGCGGT TCGCCGCCGA CGTGTGCGCC
GCGTACCTAC GGATCGCCAC CACCGGGCGG GCCGACCCGG ACGCCGTCGC ACTGCTGCGC
CGCTCCAGCC CGGCCGGGAA GCTCGACCGG ATCGAGGCGC CGACGTTGCT GGTGCAGGGG
GCAGCCGACA CCCTCTTCCC GCTCTCCGAG GCGGACGCGA ACGCCCGGGG AATCGCCGCG
ACCGGCACCC CGGTCCAGGT GGCCTGGTTC ACCGGTGGGC ACGACGGCGG CGACGGCCCG
AAGACCGACT CGGACCGGGT GCGGAACCTG ACCGTGCGGT GGCTCGACCA CTACGTCAAG
GGCGAGGGCG CGGCCCCCGC CGACGACTTC ACCTTCTCCC GGATCGCCGG GTTCGACGCA
CTCGACCGAG GTCTGGTCGC CAGCGGCTTC CGCGCCACCG GATACCCGGG CCTCACCGGT
ACCGACCAGC GCCCGGTGTC GGTGAGCGGC CCGGCGCAGT CGATCGCCAA CCCGCCGGCC
GGCAACCCTG CCGCGATCTC GTCGGTGCCC TTCGCCGGGG ATCTCTCGTC GCTGCTCGAC
GGGGTGGCCG GAGACATACC CGGCCAGCAC GCCCGGTTCG AGTCCGCGCC CTTGCCGGCG
GCCGTGGATG TGGTCGGCGC GCCGACCGTC TCCATTCGAG CCGCGTCCCC GACCGGCACG
GCCGTACTCT TCGTCAAGCT CTACGACGTT GACGCTGGAG GGTCGGCGAC CCTGCCGAAC
GGGCTGGTCG CGCCGATCCG GCTGGAGGGG CTACCGGCGG CTGTCGAGGA CGCCGAACCG
GTCACCGTCA CCCTGCCGGC GATCGTCCGT CGGATCGAGG CCGGGCACCG GCTGCGCGTC
GTGGTGGCGA CCTCCGACCA GGCGTACGCC ACCCCGGTCG AACCGGCCGT CTACAGCGTG
GCCCTGGCGA GCGAAGCGGT CACCCTGCCC ACGGTCGCCA GCGAGCCGAT CCCCACCGAC
GCCGTCGTCT GGAGGTGGGT ACTCGTCGGC CTGCTCGCCG CGATCGTGGT CGGGCTCGTC
GTGGTCGTCG CCGTCCTGCG CCACCGACAC CGGCGGCGGG AGAGCAGGGT CCACCCGACG
TACGCGGGCG TCCCGCTCGC CGTCCGGGAT CTGCGCAAGG AGTACGCGGA CGGCTTTGTC
GCCGTCTCCA ACGTCGACTT CGAGGTGCAC CACGGGCAGG TGGTGGGCCT GCTCGGCCCG
AACGGCGCGG GCAAGACCAC CACGCTGCGG GTGCTGATGG GGCTGACCCA GCCGACCGCC
GGCGAGGTCT ACGTCTTCGG GCACCGGCTG GTGCCGGGCG CCCCGGTGCT GTCCCGGATC
GGAGCCCTGG TGGAGGGCCC CGGTTTCCTG CCGCACCTGT CCGGGCTGGA CAACCTGAAG
GCGTACTGGC GGGCGACCGG GCGGCCGTGG GCCGACGCGC ACTTTGACGA GGCGTTGGAG
ATCGCCGGGT TGGGTACCTC GGTGCACCGG AAGGTCCGGA CCTACAGCCA CGGCATGCGG
CAGCGGCTGG CGATCGCGCA GGCGATGCTC GGCCTGCCGG AGCTGCTGGT GCTCGACGAG
CCGACCGACG GCCTGGACCC GCCGCAGATC GCCGAGATGC GCCGGGTCCT GCTGCGGTAC
GCCACCGGTG GCCGGGCGGT GCTGGTCTCC AGCCACCTGC TCGCCGAGGT GGAGCAGACC
TGCACCCACG CGGTGGTGGT GAACAAGGGC CAGATCGTCG CGTCCGGCCC GGTCGAGGAG
ATCGTCGGCG AGTCGCCGAG CGTTTTGATC GAGGTCACCG ATCCGGTGGC CGCGCGGGAG
GTGCTGGACC GGCTGACGGG TGTCTCGGTG CTGCCCGACG GCGACGGGCA GCTCGTGGTG
GACACCAACG GCACCGCCCG TAGCGAGGTG GTCGCCGAGC TGGTGCGGGC CGGCATCGGA
GTGGACCGGG TGGTGCCCCG GCGTCGGCTG GAGGACGCGT TCCTGGCCCT GGTCGGCGAC
AACTCTCGGG GAAGCGGGGA TCGATGA
 
Protein sequence
MRSPSPAAWV RRVLPTRRRA LAAAVVVVLL AAGVVAGTLR PSEPDLRTEA ALVTVRSGPT 
GDEPVELDTT LYLPPAATAD APVPAVLLGH GFGGTKESVR ADAEEFADRG YAVLTWTARG
FGRSGGQIHL DHPDYEVRDA QRLLDWLAAR PEVVTDAAGD PRVGVVGGSY GGALALLLAA
QDQRVDAIVP MITWNDLARS FLPENSGEGP EQGVFKKGWA GLFFGSGGNA GPASVGGSGP
AGGLAPGGGS VPGGSLPENA ATAAGAIDPS CGRFAADVCA AYLRIATTGR ADPDAVALLR
RSSPAGKLDR IEAPTLLVQG AADTLFPLSE ADANARGIAA TGTPVQVAWF TGGHDGGDGP
KTDSDRVRNL TVRWLDHYVK GEGAAPADDF TFSRIAGFDA LDRGLVASGF RATGYPGLTG
TDQRPVSVSG PAQSIANPPA GNPAAISSVP FAGDLSSLLD GVAGDIPGQH ARFESAPLPA
AVDVVGAPTV SIRAASPTGT AVLFVKLYDV DAGGSATLPN GLVAPIRLEG LPAAVEDAEP
VTVTLPAIVR RIEAGHRLRV VVATSDQAYA TPVEPAVYSV ALASEAVTLP TVASEPIPTD
AVVWRWVLVG LLAAIVVGLV VVVAVLRHRH RRRESRVHPT YAGVPLAVRD LRKEYADGFV
AVSNVDFEVH HGQVVGLLGP NGAGKTTTLR VLMGLTQPTA GEVYVFGHRL VPGAPVLSRI
GALVEGPGFL PHLSGLDNLK AYWRATGRPW ADAHFDEALE IAGLGTSVHR KVRTYSHGMR
QRLAIAQAML GLPELLVLDE PTDGLDPPQI AEMRRVLLRY ATGGRAVLVS SHLLAEVEQT
CTHAVVVNKG QIVASGPVEE IVGESPSVLI EVTDPVAARE VLDRLTGVSV LPDGDGQLVV
DTNGTARSEV VAELVRAGIG VDRVVPRRRL EDAFLALVGD NSRGSGDR