| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0246 |
|---|
| Symbol | |
|---|
| ID | 5056684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 280917 |
|---|
| End bp | 281882 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640472518 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_001157109 |
|---|
| Protein GI | 145592812 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.310709 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCG GGGCGCCGGG CGCTCCGAAC GGCACACCGG ACCGGCACCA GGTCGTGGTC
GCGATCGATG TCGGCGGCAG CAGAATGAAG TGTGCCCTGG TCCACCGGGA CGGTACGGTC
GCGCGTATCG AGCACCACCC GACCCAGACC GCACGTGGCC CGGCGGCTGT GGTCGACACC
ATCCTCGACA TAGCCGAGGC TCTGGCTGAC ACGGCCCGCC ACGAAGGGCT CGCCCCGGTG
GCGTTCGGCC TCGCCGTCCC GGGCGTCATC GACGAAGCGG CGGGGGTGGC GATCTGGTCG
TCCAACCTCG GCTTCCGCGA GGTGCCACTG CGGACACTGG CCACGGCGCG GCTCGGGATG
CCGGCGGTGC TCGGCCATGA CGTCCGCGTC GGTGGCGTCG CCGAAGCGCG GCTCGGCGCC
GGTCGGGCCG ACCGGCACGT CCTCTTCGTC GCTATCGGCA CCGGCATCGC CGCCGCCCAC
GTGGTCGACG GAACGGCCGC CGCCGGCGCG CACGGCGCCG CCGGAGAGCT CGGCCACGTC
CTGGTCCGTC CCGGCGGACC GCGCTGCGGC TGCGGGCGGG CGGGCTGCCT GGAGGCGATC
GCGTCCGCCG CGGCGGTCGC CCGCCGCTAC GCGGAGCTGA CCGACAGCAC ACCGGGGCTG
AGCGCGGCCG AGGTGGTCGC CCACGCCACC GCCGGCGACC CGCTGGCCCA GCAGGTCTGG
ACGGAGGCGG TCGAAGCCCT CGCCGACGGC CTCGCCATCG GGCAGACGCT CTTCGACGTG
GAGACGGTCG TGCTCGGCGG CGGGCTGGCC CGTGCCGGCG CCCAGCTACT CGACCCGCTG
CGGGCCGCGC TGCACGACCG GATGACCTTC CACCGCGAGC CGCGGCTGGT CCCGGCAGCC
CTCGGCGCCG AGGCCGGCTG CCTCGGTGCC GCCCTGCTCG CCCTCGACAG CCTGGAGAAG
CGATGA
|
|---|
| Protein sequence | MSSGAPGAPN GTPDRHQVVV AIDVGGSRMK CALVHRDGTV ARIEHHPTQT ARGPAAVVDT
ILDIAEALAD TARHEGLAPV AFGLAVPGVI DEAAGVAIWS SNLGFREVPL RTLATARLGM
PAVLGHDVRV GGVAEARLGA GRADRHVLFV AIGTGIAAAH VVDGTAAAGA HGAAGELGHV
LVRPGGPRCG CGRAGCLEAI ASAAAVARRY AELTDSTPGL SAAEVVAHAT AGDPLAQQVW
TEAVEALADG LAIGQTLFDV ETVVLGGGLA RAGAQLLDPL RAALHDRMTF HREPRLVPAA
LGAEAGCLGA ALLALDSLEK R
|
|---|
| |