| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0232 |
|---|
| Symbol | |
|---|
| ID | 5056670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 266097 |
|---|
| End bp | 267104 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640472504 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001157095 |
|---|
| Protein GI | 145592798 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.122052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTGCGC CAACGCGGGG TGGAGTCGTG GTGCTCGCGG GACCGCGTGG CTACTGTCGG
GTCATGCCGC TGAGTTCGCA CGAGGTCGAG CTGTTCGAGC ACTCCAGGGC CCGCCTGGAG
GCGATCGCCT ACCGTCTGCT CGGCTCGGCG ACCGATGCGG AGGACGCCGT CCAGGACACG
TTTCTGCGTT GGCAGGCCGC CGATCGCAGC CACGTCCAGA CGCCCGAGGC GTGGCTGACG
AAGGTGCTCA CCAATCTGTG CCTCAACCAG CTCACCTCCG CGCGGGCCCG GCGCGAGACG
TATGTGGGCA TGTGGCTTCC CGAGCCGGTA CTCGCCGGAG ACCGGATGCT CGGCCCGGTC
GACACCGTCG AGCGACGGGA GTCGGTCTCG ATGGCGGTGC TCGCCCTCAT GGAGCGGCTC
TCGGCCAATG AGCGGGTCGT GTATGTGCTC CGAGAGGCAT TCGGCTACTC GCACGGTGAG
ATCGCCGAGA TCCTCGACCT CACCGAGTCG AACTGTCAAC AGATCTACCG GCGTGCCAAG
CAGCACATCA TCACCAGTCG GGTGCGCACG GAGGCAGACG CGAGCAGCAC GCGGAAGATC
GTCGAGGAGT TCCTCGTCGC GGCCACCAGT GGCAAGATCC AGCGGTTGGT CGAGCTGTTG
GCCGATGACG CGACGAGTAT CGGTGATGGC GGTGGCAAGA TCCCGGCCCG GACCACGCCG
ATCATCGGAG CGCTGACGGT GGCGAGGTTC CTCCGCGGTC TGTTCAAGCC CACCGAAGCC
AGACGCGACC TGATCGGCGG CCGGCCTGCC GTCTACGCCA GCACCGTCAA CGGCGGGCCC
GCGGTGGTGT TCGTGGTCGG TGACCAGGTC GTCGGTGTGA TGGCCCTGCA CGTGACCTCC
ACGGGCATCT CGTCCATCCA CACCCAGGTC AACCCCGACA AGCTTGCCCG GATCACCCGG
CTCTGGGCCG GGTCCGAGCA CGGTGAGCCC CTCCTCGAAG CCTGGTGA
|
|---|
| Protein sequence | MRAPTRGGVV VLAGPRGYCR VMPLSSHEVE LFEHSRARLE AIAYRLLGSA TDAEDAVQDT
FLRWQAADRS HVQTPEAWLT KVLTNLCLNQ LTSARARRET YVGMWLPEPV LAGDRMLGPV
DTVERRESVS MAVLALMERL SANERVVYVL REAFGYSHGE IAEILDLTES NCQQIYRRAK
QHIITSRVRT EADASSTRKI VEEFLVAATS GKIQRLVELL ADDATSIGDG GGKIPARTTP
IIGALTVARF LRGLFKPTEA RRDLIGGRPA VYASTVNGGP AVVFVVGDQV VGVMALHVTS
TGISSIHTQV NPDKLARITR LWAGSEHGEP LLEAW
|
|---|
| |