Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_0230 |
Symbol | |
ID | 5056668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 263470 |
End bp | 265695 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640472502 |
Product | RecD/TraA family helicase |
Protein accession | YP_001157093 |
Protein GI | 145592796 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0523048 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGACG TGACCGCTGC CCCCCGTCCC GCGCTGGCGA CGCTCGACGC GGTTCTAGAG CGACTTACGT ACGTCAACGA GGAATCCGGC TACACCGTCG CCCGGGTCGC CACCGACCGC GGTAGTGATC TGTTGACGGT GGTGGGTGCG CTGCTGGGCG CGCAGCCAGG GGAGAGCCTG CGGCTGCACG GGCGCTGGTC CTCGCACCCC AAGTACGGTC GGCAGTTCGA GGTCGACTCG TACACCACGG TCCTGCCGGC CACGATCCAG GGCATCCAGC GCTACCTCGG CTCGGGCCTG GTGAAGGGCA TCGGGCCGGT TTTCGCCGAG CGGATCGTCG CCCATTTCGG CCTGGAGACG CTGCGGATCA TCGAGGAGGA GCCGGCCCGC CTGGTGGAGG TGCCGGGGTT GGGCCCGAAA CGCACCGCGA AGATCACCGC GGCGTGGGAG GAACAGCAGG CGATCAAGGA GGTCATGGTC TTCCTCCAGG GGGTCGGCGT CTCGACCTCC CTCGCGGTAC GGATCTACAA GCAGTACGGC GACACCTCCA CCGACGTGGT CACGAAGGAG CCGTACCGGC TGGCAGCCGA TGTGTGGGGA ATCGGCTTCA AGACCGCCGA CACCATCGCC CAGTCGGTCG GTATTCCGCA CGACAGCCCG CAGCGGGTCA TGGCTGGCTT GCAGTACACG CTCTCCGAGG CCACCGACAA CGGCCACTGC TACCTACCCG AACCGGAGCT GATAGCGGAC GCCACGAAAA TCCTCGATGT GCCGGCCGAC CTCGTCACCC GCTGCCTGGA TGACCTGGTC GCCGAGGAGG GCGTCGTCCG GGAGTCGCTA CCGGGCGGCG ACGCGGAGCC GGTGCGGGCG GTGTATCTGG TGCCGTTCCA CCGGGCGGAG CGGTCTCTGG CCACCAGCCT GCTCCGCCTG CTCGACGATG GGACCGATCG GTTGCCTCAC TTCGCGGGCG TCGACTGGGC CAAGGCCCTG ACCTGGCTGA AGGCGCGTAC CGGCAACGAC CTCGCCCCCG AGCAGGAGCA GGCGGTTCGG CTCGCGCTGA CCTCGAAGGT CGCGGTGCTG ACCGGTGGGC CGGGGTGCGG CAAGAGCTTC ACCGTCCGTT CGATCGTCGA ACTGGCGGCT GCCAAGAGAG CCAAGGTCAC CCTGGTGGCC CCGACCGGGC GGGCCGCCAA GCGTCTCTCC GAGCTGACCG GGCACCCCGC CGCCACGGTG CATCGCCTGT TGCAGCTACG CCCGGGCGGG GACGCCTCCT ACGACCGGGA CAACCCCCTC GACGTTGACC TGCTCGTCGT GGACGAAGCC TCCATGCTCG ACCTCATCCT GGCCAACAAG CTCGTCAAGG CCGTCCCACC CGGCGCGCAC CTGCTGCTGG TCGGCGATGT CGACCAGCTC CCCTCCGTCG GTGCCGGTGA GGTGTTGCGC GATCTACTCG CCGCTCCAGC CATCCCGCGG GTGCGGTTGA CCCAGATCTT CCGCCAGGCC GCCCAGTCCG GCGTCGTCAC CAACGCCCAC CGCATCAACG CCGGCCGCCC GCCCCTGCTC CAGGGCCTGC CGGATTTCTT CCTCTTCGCC TGCGACGACA CGGAGGCCAC CGCCGAGCGC ACCGTCGATG TCGCCTGTTC CCGCATCCCG GCCAAGTTCC GCCTCGACCC CCGCCGGGAC GTACAGGTCC TCACCCCCAT GCACCGCGGC CCCGCCGGCT CGGGGGCGTT GAACACCCTG CTCCAGCAAC GGCTCACCCC GCATCGGGAG GGGCAGCCGG AGCGGCGAGC CGGCGGGCGG GTGTTCCGCA TCGGCGACAA AGTCACCCAG ATTCGCAACA ACTACGACAA GGGCGAGGCG GGCGTCTTCA ACGGCACTCT CGGCATCGTC ACCCAGCTCT CGACCGAGGA GCAGACGCTG ACGGTCCGCA CCGACGAGGA CGAGAGCATC GACTACGACT TCGACGAACT CGACGAGCTG GCCCACGCCT ACGCCATGAC CATCCACCGC TCGCAGGGCT CGGAATACCC GGCGGTCGTC ATCCCGCTGA CCACCAGCGC CTGGATGATG CTGCAACGCA ACCTGCTCTA CACCGCCGTC ACCCGCGCCA AACAACTCGT CGTCCTGGTC GGCTCCCGCC GGGCCCTCGC CGCCGCGGTC CGCACCGTCG GCGCCGGCCG TCGGCACACC GCCCTCAACC ACCGGCTGGC CGCCGCAACG CCCTGA
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Protein sequence | MADVTAAPRP ALATLDAVLE RLTYVNEESG YTVARVATDR GSDLLTVVGA LLGAQPGESL RLHGRWSSHP KYGRQFEVDS YTTVLPATIQ GIQRYLGSGL VKGIGPVFAE RIVAHFGLET LRIIEEEPAR LVEVPGLGPK RTAKITAAWE EQQAIKEVMV FLQGVGVSTS LAVRIYKQYG DTSTDVVTKE PYRLAADVWG IGFKTADTIA QSVGIPHDSP QRVMAGLQYT LSEATDNGHC YLPEPELIAD ATKILDVPAD LVTRCLDDLV AEEGVVRESL PGGDAEPVRA VYLVPFHRAE RSLATSLLRL LDDGTDRLPH FAGVDWAKAL TWLKARTGND LAPEQEQAVR LALTSKVAVL TGGPGCGKSF TVRSIVELAA AKRAKVTLVA PTGRAAKRLS ELTGHPAATV HRLLQLRPGG DASYDRDNPL DVDLLVVDEA SMLDLILANK LVKAVPPGAH LLLVGDVDQL PSVGAGEVLR DLLAAPAIPR VRLTQIFRQA AQSGVVTNAH RINAGRPPLL QGLPDFFLFA CDDTEATAER TVDVACSRIP AKFRLDPRRD VQVLTPMHRG PAGSGALNTL LQQRLTPHRE GQPERRAGGR VFRIGDKVTQ IRNNYDKGEA GVFNGTLGIV TQLSTEEQTL TVRTDEDESI DYDFDELDEL AHAYAMTIHR SQGSEYPAVV IPLTTSAWMM LQRNLLYTAV TRAKQLVVLV GSRRALAAAV RTVGAGRRHT ALNHRLAAAT P
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