| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0220 |
|---|
| Symbol | |
|---|
| ID | 5056658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 250949 |
|---|
| End bp | 252064 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640472492 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001157083 |
|---|
| Protein GI | 145592786 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.514766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.417926 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGACA ACGACGTCCT CGTCGAGGTC CGTGACCTGA AGGTGCACTT TCCGATCAAA
CGGGGAGTGC TCTTCGACCG CACGATCGGC CACGTGAAGG CGGTTGACGG GGTCGACCTG
CGGATCCCGC GCGGTCAGAC CTACGGCCTG GTGGGCGAGT CCGGATGCGG GAAGTCGACG
CTCGGCCGGG CGCTGCTCCA GCTGACCACG CCCACCGGCG GTGAGGTCGT CTTCGACGGT
GTCGAGCTGA CCACGTTGCC GCCGGCCCGG CTGCGCGCCA TGCGTCGTCG GATGCAGATG
ATCTTCCAGG ACCCGATGTC CAGCCTGGAC CCGCGGCAGA ACGTCGAGTC GATTCTCACC
GAGGGTTTGC AGACCCACGG TATCGGCGGC AACCGGGACG AGCGACGCGC GATCATCGGG
GAGGCGCTCG ACAAGGTGGG CCTACCCCGG TGGGCGCTGT CCCGCTACCC ACACGAGTTC
TCCGGCGGGC AACGGCAGCG GATCGGTATC GCCCGGGCGG TGGTCCTCGG TCCGGAGCTG
ATCGTCGCCG ACGAGCCGGT GTCCGCCCTG GACGTGTCGA TCCAGGCGCA GGTGGTCAAC
CTCCTCGACG AACTGCAGGA GAGCCTCGGC CTCACCTACC TGGTGATCGC GCACGACCTG
GCCGTCGTCC GGCACATCTC CGACACCGTC GGCGTCATGT ACCTCGGCGC TTTGGTGGAG
GAGGCCCCGA GCGACCGGCT CTACACCGAG CCGCTGCATC CGTACACCCG GGCGCTCATG
TCGGCGGTGC CTGTGCCGGA CCCGGACGTG GAGGACCGCC GCGAGCGGAT CCTGCTCGCC
GGTGACCTGC CGTCGCCGGC CAACCCGCCA GCGGGCTGCC GATTCCACAC CCGCTGCCCG
TGGGCCCAGC CGACGCGCTG CACCGACGAA CGGCCGGTGC TGCGTGACAT CGGGGGCAGC
CGGGTGGCCT GCCACTGGGC CGAGCGGATC GCCAGCGGGG AACTCCGTCC GCACAACGCC
GGGGCGCGAG TCGCGCGGGC ATCCAGCGGC GGCGAGACCC CGGAGCCGGT GTCGATCCCG
GCCCCGACCG GGAAGGCGGA CTCCGCCGAC GCCTGA
|
|---|
| Protein sequence | MTDNDVLVEV RDLKVHFPIK RGVLFDRTIG HVKAVDGVDL RIPRGQTYGL VGESGCGKST
LGRALLQLTT PTGGEVVFDG VELTTLPPAR LRAMRRRMQM IFQDPMSSLD PRQNVESILT
EGLQTHGIGG NRDERRAIIG EALDKVGLPR WALSRYPHEF SGGQRQRIGI ARAVVLGPEL
IVADEPVSAL DVSIQAQVVN LLDELQESLG LTYLVIAHDL AVVRHISDTV GVMYLGALVE
EAPSDRLYTE PLHPYTRALM SAVPVPDPDV EDRRERILLA GDLPSPANPP AGCRFHTRCP
WAQPTRCTDE RPVLRDIGGS RVACHWAERI ASGELRPHNA GARVARASSG GETPEPVSIP
APTGKADSAD A
|
|---|
| |