Gene Strop_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_0109 
Symbol 
ID5056542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp117686 
End bp118861 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content69% 
IMG OID640472376 
Productpyruvate dehydrogenase (acetyl-transferring) 
Protein accessionYP_001156972 
Protein GI145592675 
COG category[C] Energy production and conversion 
COG ID[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 
TIGRFAM ID[TIGR03181] pyruvate dehydrogenase E1 component, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGG GCGACCCCGG GGTCAACACC CGCGGCCGGC GGGCCGTACC CCGATCCAGG 
AAGGGCGCGA CCGGCGACCC CGAGCTGGTG CAGCTACTCA CCCCCGAAGG TGAGCGCATC
GAGAGTGTGA CCGGGCCGGA CGGCACCGAA TACCGGGTCG ACTTCACCGA CGAGGAGTAC
CGCGGCTTCT ATCGGGACCT GGTGCTGGTG CGAAAGCTGG ACGCCGAGGC GACCGCCCTT
CAGCGGCAGG GCGAGCTGGG CCTCTGGGCG AGCCTGCTCG GCCAGGAGGC GGCCCAGGTC
GGTTCCGGCC GGGCACTGCG TACGCAGGAC ATGGCCTTCC CGACCTACCG GGAACACGGC
GTCCTCTACT GCCGGGGTAT CGACCCGATC ATGCCGCTGG GCCTGTTCCG CGGAGTTGAC
CAGGGCGGCT GGGACCCGAA CGAGTTCAAG TTCAACATGT ACACGATCGT GATCGGGGCA
CAGGCCCTGC ACGCGACCGG GTACGCCATG GGCATCACCA TGGACGGCAA GACCGGCACC
GACGAGGGCG AGGCGGTGAT CGCCTACTTC GGCGACGGCG CCACCAGCCA GGGCGATGTC
AACGAGGCGT TCGTGTGGGC CAGCGTCTTC AACGCGCCGA TGGTCTTCTT CTGCCAGAAC
AACCAGTACG CCATCTCGGA GCCGCTGGAG CGCCAGACCC GCATCCCGCT CTACCGGCGG
GCCGCCGGCT TCGGCTTCCC CGGCCTTCGG GTGGACGGCA ACGACGTGCT GGCCACCTAC
GCGGTGACCC GGCACGCGCT GGACAACGCG CGGCACGGGC AGGGCCCGAG CCTGATCGAG
GCGTACACCT ATCGGATGGG GGCGCACACC ACCTCCGACG ACCCCACCCG GTACCGGATC
GCCAGCGAGG TCGAGGCCTG GCAGGCCAAG GATCCGATCG CCCGGATGAA GACCTTCCTG
GAGAAGCAGA AGATCGCCGA CGACGGCTTC TTCGCCGAGG TGGACGAGCA GGCCAAGCGC
GAGTCGGTGC ACCTGCGCGA GCGGGTGCTG GAGATGCCGA ACCCGGAGCC GAGCAGCATG
TTCGACCACG TCTACCCCAA CGGATCGCCC CTGGTCGACC AGCAGCGGGC GCAGTTCAAC
CAGTACCTGG AGTCGTTCGA GGGGAGCGCG CACTGA
 
Protein sequence
MAKGDPGVNT RGRRAVPRSR KGATGDPELV QLLTPEGERI ESVTGPDGTE YRVDFTDEEY 
RGFYRDLVLV RKLDAEATAL QRQGELGLWA SLLGQEAAQV GSGRALRTQD MAFPTYREHG
VLYCRGIDPI MPLGLFRGVD QGGWDPNEFK FNMYTIVIGA QALHATGYAM GITMDGKTGT
DEGEAVIAYF GDGATSQGDV NEAFVWASVF NAPMVFFCQN NQYAISEPLE RQTRIPLYRR
AAGFGFPGLR VDGNDVLATY AVTRHALDNA RHGQGPSLIE AYTYRMGAHT TSDDPTRYRI
ASEVEAWQAK DPIARMKTFL EKQKIADDGF FAEVDEQAKR ESVHLRERVL EMPNPEPSSM
FDHVYPNGSP LVDQQRAQFN QYLESFEGSA H