| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0096 |
|---|
| Symbol | |
|---|
| ID | 5056529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 102658 |
|---|
| End bp | 103335 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640472363 |
|---|
| Product | hemolysin III family channel protein |
|---|
| Protein accession | YP_001156959 |
|---|
| Protein GI | 145592662 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCACCT CCGCGCCAAG CCGCCTCAAG CCGACCGACC TCGGCAAGCC GCGGATGCGC
GGCTGGCTGC ACACGTACGC GTTCTTCGTC GCCGTCGCCG GCGGGATCGT CCTCTGCTCC
ATCGCCGCTG CCCGGACCGG CTGGTCGCCG CTGGTCAGCA CCCTGATCTA CAGCCTGACC
GTCTGCGGAC TCTTCGGCAC CAGCGGGCTC TACCACCGAC GGGTGTGGTC AGAGCGGGGC
TTCCAGGTCA TGCGGCGGAT GGACCACTCG ATGATCTTCG TCTTCATCGC TGGTACGTAC
ACGCCGTTCT GCGTCCTGCT GCTGGAGCCC CGACCGGCGA CGATCATGCT CTCGCTGGTG
TGGGGCGGCG CGCTCGGGGG CGTGGCGCTC AAGCTCATCT GGCCGCACGC CCCGCGCTGG
GTCTCCGCGC CGCTCTACCT GGCGCTCGGT TGGGTTGCGG TGGCGATGCT GCCCGATATT
CTCCACGCGG GCGGGGTGAC CGCCCTGGTC CTGCTGATCG TCGGCGGCGC GATCTACAGC
ATCGGCGCGG TCAGCTACGC CCTCCGTCGG CCCAACCCGT GGCCCACCGT CTTCGGCCAC
CACGAGTTCT TCCACGCCTG CACCCTGGTG GCCGCGATCT GCCACCACAT CGCGATCTAC
TTCGCCCTCT TCGCCTAG
|
|---|
| Protein sequence | MTTSAPSRLK PTDLGKPRMR GWLHTYAFFV AVAGGIVLCS IAAARTGWSP LVSTLIYSLT
VCGLFGTSGL YHRRVWSERG FQVMRRMDHS MIFVFIAGTY TPFCVLLLEP RPATIMLSLV
WGGALGGVAL KLIWPHAPRW VSAPLYLALG WVAVAMLPDI LHAGGVTALV LLIVGGAIYS
IGAVSYALRR PNPWPTVFGH HEFFHACTLV AAICHHIAIY FALFA
|
|---|
| |