Gene Pnuc_2017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_2017 
Symbol 
ID5052954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp2088631 
End bp2089305 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content48% 
IMG OID640472191 
Producthypothetical protein 
Protein accessionYP_001156792 
Protein GI145590195 
COG category[S] Function unknown 
COG ID[COG3159] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCA TCGATCCAAA GCAAGCCGAG CAAGAAGAAT TAGTTGCTGA ATGGTTGCGC 
GTTACCCCAG GCTTCTTTGA GCGCTATGCC GATCTCTTTA ATGAGATTCG CATTAAGCAT 
CCGCACGAAG ATCGTGCGAT CTCTTTGCAA GAGCGTCAGA TGACCGTATT GCGCACACAA 
AATCAAGAGC TCAATCGCCG TCTAAGCGAG ATGTTGCATT TTGGCAGTCG TAACGATAAA 
ACCCAACAAA GTTTGGTCGC CTGGTTACTG CGTTTAATGA AGGCAAATAA CAAGGCCGAT 
GTGGAAGCGG CAATTACCTC GGGCTTGTCA GAAGTTTTTG AGGTGGAGTC GGCACAATTA 
CTATCCCCGA ACTCAGCGTT TGGTCCATGG GTAGATACAC CTTTATGCGG TTCAGCAAAA 
GAATTGGCCG CAGCCAGTGT AGATTTACTC GCCAGCCAAA CCACGATTGA TCCTGAGTGG 
CAAAGCATGG TGGCTATTGG CCTACCTCTA GGTAAAAGCC TTGACGCCTC TCAATCCCCG 
GCAGTGTTGT TGCTAGCAAG CAAGGATGAA TCGCGCTTTA CAGCCGATAT GGGTGCTTTC 
TACTTACGTC AGATCGCTGA ATTAACCGCT GCAGCTTTGG ATCGTATCCA GGCTTATGAA 
ATTAAAGGCA ACTGA
 
Protein sequence
MSAIDPKQAE QEELVAEWLR VTPGFFERYA DLFNEIRIKH PHEDRAISLQ ERQMTVLRTQ 
NQELNRRLSE MLHFGSRNDK TQQSLVAWLL RLMKANNKAD VEAAITSGLS EVFEVESAQL 
LSPNSAFGPW VDTPLCGSAK ELAAASVDLL ASQTTIDPEW QSMVAIGLPL GKSLDASQSP 
AVLLLASKDE SRFTADMGAF YLRQIAELTA AALDRIQAYE IKGN