| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1999 |
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| Symbol | |
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| ID | 5052063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 2070516 |
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| End bp | 2072402 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640472173 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001156774 |
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| Protein GI | 145590177 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAGCG CCTTCGCTGA GAAATTAAAG AAACCAAGTT TGCCAAAGTC TTATGAGAGC
AAAGCAGCTC CTGCCGAAAT CACCGACACC GATCGGATGT TTATTGATTT ACGGGAGGCC
GCCAAAAAGA ATGATATCTT TCGTACACAG CAGCTTTCTT CAAATTTGGC GAATTATCCA
TTTGATGACT ATGTGGCTTA TTTTCGAATT AAGCCGCAAT TATTTGACAG TGGCGGTGCG
GCACGTGGAG ACTACAGTGC TGACTCACAA GTGATTGCCT TCTTAAATCA ATATCAAGGT
ACTGCGTTGG CAGACCGAAT GCGCAATGAT TGGTTGCTAG TTTTAGGTAA GCGTAAAGAT
TGGTCGCGCT TTGATATTGA GTATGCCAAG TTTGTATTGG ATGATGATAC GCAAGTAAAG
TGCTATTCAC TTTTATCAAA ATTGTCACAA GGCGAAAACC CAACTAAGCT AGGTATTGAC
GCTCGATCAG TGTTGTTGGA TCCCAGCTAT TTTGGCCAAG CCTGTCAGGA ATTGGTACCT
TCATTAGTGG CTGCTGGCGG TATGAATCCT AGCGAGGCCA AAGCAATTGG CCGTGCTGCT
AGCGAAAAAG GATATGACAC GATGGCTCGC CGTCTCGGCG GCGAAGATCC AATTGCAGAT
GTTGTGAAAT CTGCTAAAGC CGATCCATCT AAAGCGTATA AAGATTTTTC ACAGAATGCT
TCTCGCTATA GCAAAGAGAA CCAAGCTGTT GCTTGGGGAG TCATTGGACA ATTTTTAGCA
AAGAAATTAG ATCCTAATGC GGATGACGCC TACCGTTTAC AACAAGACCT TGGTTATAAC
GAGCTACTTT CTGTTGAATC ACAGGAGTGG AAGGTGCGTG CCGGCTTACG TGCTAAAGAT
TGGGTCTTGG TAAAGAATGC CATTGATGGT ATGAATCCCG CAGTACGAAG CAAAGATCCA
GCATGGACCT ATTGGTACGG ACGCGCATTA AAAGCCGAGG GCCAAGAGGC TAAAGCGAGA
GAGAACTTTG AACTCATTGA TGAGCAATAC AACTTTTATG GTCAACTTGC ACGTGAAGAG
TTAGGCAAGT CGAATCATGC GCCTGCACGA ACTAAGGTCA CTGACCAAGA GATTGATGTA
ATGGCTAGCC GTAAAGGATT TATTCGCAGT GAGCGTTTAT ACGCCATGAA CCTGCGCTTT
GAAGGTAACC GCGAATGGAA TTGGGAGCTA CGTAATATGT CGGATAAGCA ATTGCTTGCC
GCAGCGGAAT ATGCCAAGCG AATTAATTTG TATGACCGTG TTGTGAATAC TGCCGATCGT
ACAAAACAAG AGCATGATTT CAGCTTGCGT TATCCAACGC CCTACCGTGA TGAGCTTTCT
CCAATTGCCA GGCAGATCGA TTTAAACCTA GCTTGGGCTT ATGGCTTGAT TCGTCAGGAG
TCCCGCTTCA TTATGAATGC CTCTTCATCG GTGGGTGCTT CTGGTTTGAT GCAAGTGATG
CCAAGTACTG CTAAGTATGT TGCCAAGAAA ATTGGGATGA TCAATTACAC CAACGATAAG
TTAAGTGATA CCAACACCAA TCTCACTTTG GGTAGTAATT ATCTTAATAT GGTTTTGATT
GATTTGGATG GCTCTTGGGT ATTAGCATCT GCGGCATACA ATGCTGGACC TGCACGTTCA
AAAGCATGGC GAGAAAAATT AAATGGGCCT ACTGAAGGCG CTATTTTTGC TGAGACCATT
CCCTTTCCAG AGACGCGAGT CTACGTCAAG AACGTGTTAT CAAATGCTAA TTACTATTCA
TCTGTATTGA ATGGACAGAG TCAATCTTTA AAACAGCGTT TAGGAGTTAT TACGCCTAAG
GCCGCTACTC CATCTGAATT ACCCTAA
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| Protein sequence | MPSAFAEKLK KPSLPKSYES KAAPAEITDT DRMFIDLREA AKKNDIFRTQ QLSSNLANYP
FDDYVAYFRI KPQLFDSGGA ARGDYSADSQ VIAFLNQYQG TALADRMRND WLLVLGKRKD
WSRFDIEYAK FVLDDDTQVK CYSLLSKLSQ GENPTKLGID ARSVLLDPSY FGQACQELVP
SLVAAGGMNP SEAKAIGRAA SEKGYDTMAR RLGGEDPIAD VVKSAKADPS KAYKDFSQNA
SRYSKENQAV AWGVIGQFLA KKLDPNADDA YRLQQDLGYN ELLSVESQEW KVRAGLRAKD
WVLVKNAIDG MNPAVRSKDP AWTYWYGRAL KAEGQEAKAR ENFELIDEQY NFYGQLAREE
LGKSNHAPAR TKVTDQEIDV MASRKGFIRS ERLYAMNLRF EGNREWNWEL RNMSDKQLLA
AAEYAKRINL YDRVVNTADR TKQEHDFSLR YPTPYRDELS PIARQIDLNL AWAYGLIRQE
SRFIMNASSS VGASGLMQVM PSTAKYVAKK IGMINYTNDK LSDTNTNLTL GSNYLNMVLI
DLDGSWVLAS AAYNAGPARS KAWREKLNGP TEGAIFAETI PFPETRVYVK NVLSNANYYS
SVLNGQSQSL KQRLGVITPK AATPSELP
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