| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1989 |
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| Symbol | |
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| ID | 5053077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 2058656 |
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| End bp | 2059795 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640472163 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001156764 |
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| Protein GI | 145590167 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAGCCAT TGCCACGTCG TATGACCATT ATGTTGTGCG GTGTAGTGTT ATTGCTTGGC
TTAATTTTTT CTTTTAATCA ATTGAAGACA ATCATGATTA AGCATTTCAT ATCCGGAATG
GGCTTGCCAC CAGCAACTGT TTCAACGATG GTTATTGAAA CTTCTGAGTG GCAGCCTAAG
CTCACTAGCG TAGGTAATGT GCGCGCATTC CGGGGCGTGG AGTTGAGTAC TGAAATTGGC
GGATTAGTAC AAACCGTTCC GATTAAATCA GGTCAAGATG TAAATGAAGG TGATTTACTC
ATTAAGTTAA CTGATGCTTC TGATGTTGCA CAACTCAACT CTTTAAAAGC CCTTGCCGAT
CTTGCAAAAG TCATTAATGA GCGCGATAAA CAGCAGTTGG CCATTCAGGC AATTAGTAAA
AACGTGTTTG ATACCAGCAA AGCCGACGCT AAATCTAAGC AGGCTCAAGT CGAGCAGCAG
ATTGCTTTAG TCGCTAAGAA GAATTTAAAG GCGCCATTTA GCGGTCGCAT CGGCATTGTT
TCTATTAACC CGGGCCAATA TGTAAATCCG GGCGACAAGC TGTTAACTCT GCAGACCTTA
GATCCTATTT TTGTCGATTT CAACTTGCCA CAAAATAATG CAGAGCAAAT TCAGGTCGGG
CAAGATGTGA CTGTGACTAC TGATGCATTT AAAGATGCGA GCTTTACTGG CAAGATTACT
GCGGTAAGTC CCAAGGTTGA TACCAATACT CGGAATATTC AAGTAGAAGC GCAGATTGCT
AATCCTGATA AGAAAATTCT TCCAGGAATG TTTGCTAATG TAAATATTCA AATTGGTGGC
CCCGTAAAAC TGCTGACCCT GCCACAGACA TCAGTGACCT ATAACCCTTA CGGCTCAACA
GTATTCATTG CTAAGCCTAC AGGTAAAAAA GATAAACAAG GTAACCCTGC ATTAGAGGCT
CAACAAGTAT TTGTGACAAC GGGTGCAACC CGTGGCGATC AAGTCTCGAT TTTGAAGGGT
GTTGATGAGG GCGCTACTGT CGTGACTAGC GGACAGTTAA AGTTGAAGAA CGGTACTCCT
TTGATTATCA ATAACAAGGT GCAACCTGCT AACTCACCTA ATCCTAAGCC ACAGGAATAG
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| Protein sequence | MEPLPRRMTI MLCGVVLLLG LIFSFNQLKT IMIKHFISGM GLPPATVSTM VIETSEWQPK
LTSVGNVRAF RGVELSTEIG GLVQTVPIKS GQDVNEGDLL IKLTDASDVA QLNSLKALAD
LAKVINERDK QQLAIQAISK NVFDTSKADA KSKQAQVEQQ IALVAKKNLK APFSGRIGIV
SINPGQYVNP GDKLLTLQTL DPIFVDFNLP QNNAEQIQVG QDVTVTTDAF KDASFTGKIT
AVSPKVDTNT RNIQVEAQIA NPDKKILPGM FANVNIQIGG PVKLLTLPQT SVTYNPYGST
VFIAKPTGKK DKQGNPALEA QQVFVTTGAT RGDQVSILKG VDEGATVVTS GQLKLKNGTP
LIINNKVQPA NSPNPKPQE
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