| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1979 |
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| Symbol | |
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| ID | 5052137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 2047438 |
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| End bp | 2050188 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640472154 |
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| Product | methionine synthase |
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| Protein accession | YP_001156755 |
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| Protein GI | 145590158 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAGA TAGATAAAAA ATCCGTGCCA GCTATGAAGC TCTCTGGACT TGAGCCATTC
AATGTCACCC CAGCTGTTGG CTTTGTCAAT ATTGGTGAGC GCACCAACGT GACAGGATCT
AAAGCATTTT CTCGCATGAT TTTGAATAAT CAATTTGATG AAGCACTTGC TGTCGCTCGT
CAGCAGGTTG AAAACGGTGC TCAAGTCATT GATATTAATA TGGATGAGGC AATGTTGGAT
TCAGAGGCAG CGATGACGCG CTTCTTAAAT CTGATTGCTT CAGAGCCAGA TATTGCTCGC
GTTCCTATCA TGATCGACTC CTCCAAGTGG AGTGTTATCG AAGCGGGATT AAAGTGTATT
CAGGGCAAGC CAATCGTAAA CTCCATCTCC TTGAAAGAAG GAGATGAGCC TTTCCGCAGG
CAGGCGCGCC TTATCCGTCG TTACGGTGCA GCTTCCGTGG TAATGGCTTT TGATGAGGTA
GGTCAGGCTG ATACCTTTAA ACGTAAAACT GAAATTTGCA AACGTTGCTA TGACATCTTA
GTCAATGAGA TTGGCTTTCC TGCTGAAGAT ATTATTTTCG ATCCCAATAT CTTTGCAATT
GCTACTGGTA TTGAAGAGCA TGACAACTAT GCAGTCGACT TTATTAATGC CACGCGTTGG
ATTAAAGAAA ACCTTCCTGG CGCAAAGGTA AGTGGTGGCG TATCGAATGT AAGCTTCTCC
TTCCGCGGCA ATGACCGTGT GCGTGAGGCT ATTCATACAG TGTTCCTGTA TCACGCCATC
CAGGCGGGTA TGGACATGGG TATTGTGAAT GCTGGTCAGT TAGGTGTCTA TGCCGATCTA
GATCCTGAAT TGCGCGAGCG CGTAGAGGAT GTAGTGCTTA ATCGCTTTAA AGAAAAAGAT
GGCAAGACGC CAACAGAGCG TCTGCTCGAT ATCGCTGATC AATTTAAAGG TGGTGGCGCA
AAACAGGTTG AGAATTTGGT GTGGCGTGAA GCGCCTGTGC GTGAGCGGCT GACACATGCC
TTAGTTCATG GGATCACTAA TTTCATCGAA GGCGATACTG AAGAGCTGCG TGTAGAGATT
ATGAGTGCAG GTGGCAGACC TATTGAGGTC ATTGAAGGCC CACTCATGGA TGGTATGAAC
GTTGTCGGCG ATCTATTTGG TGCCGGCAAA ATGTTTTTGC CTCAGGTAGT GAAGAGTGCT
CGTGTCATGA AACAAGCTGT TGCGATTTTA ATTCCCTATA TTGAGGAAGA AAAGCGTCAG
CACGTTGCCG CAGGTGGTGA AGCAAAAGCC AAAGGCAAGA TTGTGATGGC TACCGTGAAG
GGCGACGTTC ACGATATTGG AAAAAATATT GTGACGGTGG TGTTGCAATG TAATAACTTT
GAAGTTGCCA ATATGGGTGT GATGGTTCCT TGTGCTGAAA TTCTGAAGCG CGCCAAAGAA
GAGAAGGCAG ATATTGTTGG TCTCTCAGGT TTGATTACCC CTTCTTTGGA AGAGATGACT
TATGTTGCGC AAGAGATGCA ACGTGATGAC TATTTCCGTG AACGCCAAAT TCCATTGATG
ATTGGTGGCG CAACAACCTC GCGCGTTCAT ACTGCTGTGA AGATTGCTCC GCACTATGAC
GGTCCAGTGG TCTATGTTCC TGATGCTTCA CGTTCGGTAT CTGTTGCCTC TAGCTTGCTT
TCTGACGAAA GTGCCAAAAA ATTTATTCAA GACTTACGCG ATGACTATGT CCGCATTCGT
GAGCAGCATG CCAATAAAAA AGCGGCGCCA ACTATCTCTT TAGAGGCTGC ACGCAAGAAT
CGAGAAATGA TTGATTGGGC TGCTTATGTG CCCGAAAAGC CTAAATTTAT TGGCCGTCGA
GTCTTTAAGA ATTTCGCCTT AAGCGACATA GCTAAATATA TCGATTGGAC ACCATTTTTC
CAGACCTGGG ACTTGGCTGG CAAGTTTCCG GCAATCTTGG ATGATGAGGT TGTTGGCGTT
GAGGCACGCA AAGTATTTGA AGATGCACAG GCATTGTTAG ATAAGTTAAT TAAAGGCCAA
TGGTTGCAGG CGGATGCAGT AGTCGCTTTC TATCCTGCTA ATACGATTGG CGACGATATC
GTGTTGTATA GCGATGAAGC ACGCCAACAT CCTCTCTTTG TATGGCATAA CTTGCGTCAA
CAGTCTGAGC GACCCATTGT GGATGGTGTT CGCAGACCTA ATCGTTGCCT TGCTGATTAT
GTGGCACCAA AAGATTCGGG CGTGGCTGAC TATTTAGGTT GTTTTGTAGT TACCACTGGT
CACGGCGTAG AAAAGAAAGT TGCTGAATTT CAGGCAAAGC ATGATGACTA CAGTGCAATT
ATGTTGAAGG CTTTGGCTGA TCGCCTAGCA GAGGCATTTG CTGAGTTGAT GCACCATCGT
GTGCGTACTG ATCTCTGGGG TTATGCGACT GATGAGATTC TGACAAATGA TCAAATGATT
AATGAAGAGT ACCGCGGTAT TCGTCCAGCG CCTGGCTATC CTGCCTGCCC AGCCCATGAG
GTAAAGCAAG ATCTATTGCG AGTTATTGGT TCTGAAGATA TTGGTATGAC GTTAACTGAA
TCAATGGCCA TGAATCCTGC ATCCAGCGTG AGCGGGTTTT ATTTGGCTCA TCCTGATGCT
CGGTATTTCA ATGTTGGTAA GCTTTCAAAC GATCAGGTGG AAGATCTTGC GAAGCGCCGG
GGTCAATCAG TTGAAGATAC GCGCCGTCAA CTTGCGAGCT TATTGGATTA A
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| Protein sequence | MSQIDKKSVP AMKLSGLEPF NVTPAVGFVN IGERTNVTGS KAFSRMILNN QFDEALAVAR
QQVENGAQVI DINMDEAMLD SEAAMTRFLN LIASEPDIAR VPIMIDSSKW SVIEAGLKCI
QGKPIVNSIS LKEGDEPFRR QARLIRRYGA ASVVMAFDEV GQADTFKRKT EICKRCYDIL
VNEIGFPAED IIFDPNIFAI ATGIEEHDNY AVDFINATRW IKENLPGAKV SGGVSNVSFS
FRGNDRVREA IHTVFLYHAI QAGMDMGIVN AGQLGVYADL DPELRERVED VVLNRFKEKD
GKTPTERLLD IADQFKGGGA KQVENLVWRE APVRERLTHA LVHGITNFIE GDTEELRVEI
MSAGGRPIEV IEGPLMDGMN VVGDLFGAGK MFLPQVVKSA RVMKQAVAIL IPYIEEEKRQ
HVAAGGEAKA KGKIVMATVK GDVHDIGKNI VTVVLQCNNF EVANMGVMVP CAEILKRAKE
EKADIVGLSG LITPSLEEMT YVAQEMQRDD YFRERQIPLM IGGATTSRVH TAVKIAPHYD
GPVVYVPDAS RSVSVASSLL SDESAKKFIQ DLRDDYVRIR EQHANKKAAP TISLEAARKN
REMIDWAAYV PEKPKFIGRR VFKNFALSDI AKYIDWTPFF QTWDLAGKFP AILDDEVVGV
EARKVFEDAQ ALLDKLIKGQ WLQADAVVAF YPANTIGDDI VLYSDEARQH PLFVWHNLRQ
QSERPIVDGV RRPNRCLADY VAPKDSGVAD YLGCFVVTTG HGVEKKVAEF QAKHDDYSAI
MLKALADRLA EAFAELMHHR VRTDLWGYAT DEILTNDQMI NEEYRGIRPA PGYPACPAHE
VKQDLLRVIG SEDIGMTLTE SMAMNPASSV SGFYLAHPDA RYFNVGKLSN DQVEDLAKRR
GQSVEDTRRQ LASLLD
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