Gene Pnuc_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1953 
Symbol 
ID5052209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp2026256 
End bp2026678 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content48% 
IMG OID640472128 
ProductPTS system fructose subfamily IIA component 
Protein accessionYP_001156729 
Protein GI145590132 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2893] Phosphotransferase system, mannose/fructose-specific component IIA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.478218 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGGAA TCGTAATCGT TGCACATACC CCCATTGCAA GTTCAATGTT GAATTTTGTA 
GAGCACACTT TTGGCTCTCT GCCGGAACGC GTTAGGGCGG TAGATATTCC GCCGCATGAA 
GATACTAAGG CAAGTTTCGA TCGAGTGATG AAGGCAGCCT ATGGCGTGAA TAGCGGTAAT 
GGCGTCCTTA TTCTGACCGA TGTAATGGGG GCAACCCCCG CAAATGTCGC GTCAAAGTTA 
GAGTCGCTTG GCCCCTTATC AGGATTAAAT GCCCCAATTA TTGTGCTCGC AGGACTAAAT 
CTGCCAATGT TGATGCGCTG TATCTCGCAT CGAGGTGAAG ACTTAGAGGG GCTTGCGCAA 
AAGGCACTGG CTGGTGGCCA AAATGGAATA TTGCGCCTTG GTACCAAGGT AAATCAAGAT 
TAA
 
Protein sequence
MTGIVIVAHT PIASSMLNFV EHTFGSLPER VRAVDIPPHE DTKASFDRVM KAAYGVNSGN 
GVLILTDVMG ATPANVASKL ESLGPLSGLN APIIVLAGLN LPMLMRCISH RGEDLEGLAQ 
KALAGGQNGI LRLGTKVNQD