Gene Pnuc_1922 details

Gene Information

• Locus tag: Pnuc_1922
• ID: 5052205
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 2001050
• End bp: 2001640
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640472097
• Product: peptidyl-tRNA hydrolase
• Protein accession: YP_001156698
• Protein GI: 145590101
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0193] Peptidyl-tRNA hydrolase
• TIGRFAM ID: [TIGR00447] peptidyl-tRNA hydrolase

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTAAAT TAATTGTTGG CCTCGGCAAC CCTGGAGAGG AACATACAGA AGATCGGCAC 
AATGCTGGCT TCTGGTTTTT GGACGTCTTA GCCAAACAAT TAAATTCACG TTTTGAATCT 
GAGAAACGCT TTCATGGAAA AGTAGCAAAG GCGAAATGGG AAGGCGAGGA TCTCTTTTTA 
CTTAAGCCAA GTACCTATAT GAATTTAAGC GGTCAATCGG TTGGTGCATT GTGTCGCTTT 
CATAAAATCA CACCAGCTGA AATCTTGGTA GTACAAGATG AGCTTGATCT GAAGCCTGGC 
ACTGCACGCC TGAAGTTGGG GGGTGGCACA GGTGGTCACA ATGGCTTAAA AGATATACAA 
GCCCATTTAA GTACGCCAGA ATACTGGCGC CTTCGCTTAG GTATTGGGCA TCCGCGAGAC 
CTTGCAGGTG ATGGTCGCCC TATGGATGTG GCTGATTATG TGTTACGCAG ACCACAGCTA 
GCTGAGCAAA AGATGATTGA TGCCAGTATT GAAAATGGGC TGCAAATTTT GCCGCTATTT 
TTAAAAGGCG ATACGCAAAC TGCCATGATG GAGCTGCATT CTAAGGCTTA A 

 

Protein sequence

MTKLIVGLGN PGEEHTEDRH NAGFWFLDVL AKQLNSRFES EKRFHGKVAK AKWEGEDLFL 
LKPSTYMNLS GQSVGALCRF HKITPAEILV VQDELDLKPG TARLKLGGGT GGHNGLKDIQ 
AHLSTPEYWR LRLGIGHPRD LAGDGRPMDV ADYVLRRPQL AEQKMIDASI ENGLQILPLF 
LKGDTQTAMM ELHSKA