Gene Pnuc_1893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1893 
Symbol 
ID5053640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1969233 
End bp1969886 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content44% 
IMG OID640472067 
Producthypothetical protein 
Protein accessionYP_001156669 
Protein GI145590072 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0372929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT TCTTTATCGC TGGCATTCTC GTATGGGCTC CCATGGCAGT CACCATTTGG 
GTGATTACTT GGGGCTTGGG TTTGCTCGAT GGCGTTTTTG GTTCTGTAAT GCAGGCAATC 
ATCGCTGTTT TCCCGCATCA GTTTGCAGCC GATCTTCAGC ATTTCCGCGA ATTACCCGGT 
GTTGGAATTT TGATTGTAGT TTCAGTCATT ATTGTTACCG GCGTTATCGC AATTAGTTTT 
GCTGGGCAGT GGTGGATCAA GGTATGGGAT AAATTGGTCA ATCGTATTCC AGTAGTGCGC 
TCAATTTATT CTAGCGTTCA ACAAGTTTCT TCTACTTTAT TTTCTGGCAG TGGTCAGGCA 
TTTAGTAAAG CCTTATTGAT TCGTTACCCC CATTCAGAAT CATGGGCGAT TGCCTTTCAA 
ACTGGCGCTC CTGCAAAAGA GGTTACCGCT AAATTAGGCG AGGGATATGT CAATGTCTTT 
CTACCTACTA CCCCAAACCC TACCTCTGGT TTTTTTATGA TCGTAAGACG CGATCAAACT 
ATCGAACTAG AGATGAGTGT CGAAGAGGCC TTGAAACACA TTGTTTCTAT GGGTTCTGTT 
CCACCAAATA ATTCTAGTGG CCTGACTGCT CTTGAGTCGC CACCCCATTT TTGA
 
Protein sequence
MKKFFIAGIL VWAPMAVTIW VITWGLGLLD GVFGSVMQAI IAVFPHQFAA DLQHFRELPG 
VGILIVVSVI IVTGVIAISF AGQWWIKVWD KLVNRIPVVR SIYSSVQQVS STLFSGSGQA 
FSKALLIRYP HSESWAIAFQ TGAPAKEVTA KLGEGYVNVF LPTTPNPTSG FFMIVRRDQT 
IELEMSVEEA LKHIVSMGSV PPNNSSGLTA LESPPHF