| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1875 |
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| Symbol | |
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| ID | 5052351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1951402 |
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| End bp | 1952418 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640472048 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001156651 |
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| Protein GI | 145590054 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.347558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTG GCCCTCACGA CCTTGCAAAT AGACTATTTG TAGCCCCTAT GGCTGGGGTA
ACTGATCGTC CCTTTAGGCA ACTTTGTAAA AAGTTGGGTG CTGGATATGC CGTTTCAGAA
ATGGTGGCCT CCAATGCGCT TCTTTGGAAG AGTGAGAAAA CTCAGCGTCG CGCCAACCAC
ATTGGTGAAT TTAAGCCAAT CGCAGTTCAA ATCGCTGGGG CAGATCCAGC CATGATGGCG
GCGGCTGCCA AAATAAATGT TGATCATGGC GCACAAATTA TTGACATCAA TATGGGCTGC
CCCGCTAAAA AAGTTTGCAA TGTTGCAGCC GGTTCCGCTT TATTGCGTGA CGAGCCTTTA
GTGCAACAAA TTCTTGAGGC TGTTGTAAAT GCTGTTGGTG TTGGTCCCGA TGCCGTTCCG
GTTACTTTGA AGATTCGTAC GGGCTGGGAT CGCGAACATA AAAATGCCAT TGAGATTGCA
CGGCTTGCAG AAAAGTCTGG CATCTCCATG CTGACTGTTC ATGGCCGTAC TCGCGCTGAT
TTATATCATG GTGAAGCGGA GTATGAAACG ATCACTGCTG TAAAAAATTC TGTGAATATT
CCAGTGGTAG CAAATGGTGA TATTCATTCC CCCGAAAAGG CTGAACAAGT TTTAAAGATA
ACTGGCGCTG ATGCCATCAT GATTGGGCGT GCTGCCCAGG GTCGCCCTTG GATCTTTCGC
GAAATTAATC ACTACCTTGA AACTGGGGGG AAGTTACCCA CCCCGGAGAT CAATGAGATC
CAGGCAATTA TGAATGCCCA TCTCTTGGAT CACTACGAGT TCTACGGTGA ACACATTGGC
CTTCGTACTG CCCGCAAGCA TATTGGCTGG TATTGCAAAG GCTTAAGAGA CTCCCATGCA
TTTCGTCAGC GCATGAATAC TGCTGATGAC TGCAAAACCC AATTACAAAT GGTGAATGAT
TACTTTAATG AAATGAAATC TCATTCTGAT CGCCTCCTCT TTTTAGAGGC AGCTTAA
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| Protein sequence | MKIGPHDLAN RLFVAPMAGV TDRPFRQLCK KLGAGYAVSE MVASNALLWK SEKTQRRANH
IGEFKPIAVQ IAGADPAMMA AAAKINVDHG AQIIDINMGC PAKKVCNVAA GSALLRDEPL
VQQILEAVVN AVGVGPDAVP VTLKIRTGWD REHKNAIEIA RLAEKSGISM LTVHGRTRAD
LYHGEAEYET ITAVKNSVNI PVVANGDIHS PEKAEQVLKI TGADAIMIGR AAQGRPWIFR
EINHYLETGG KLPTPEINEI QAIMNAHLLD HYEFYGEHIG LRTARKHIGW YCKGLRDSHA
FRQRMNTADD CKTQLQMVND YFNEMKSHSD RLLFLEAA
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